>PF17088 (388 residues) LSSVLSLLINIDQETILDFLGINGPFNSEDYSYLFGTSQVSTPVSLETFKLIIQSIWEHY QHGLGFVDIENIALFILVIRFIFLSKKYNIKTGFFITCIGLGAGYLWYMHLRDLAYYYMR TLWMCPLTHNLAYDFSEIFYQQRSEFSKAGTRFDSNSFYGPAVRAFTDITSNDNYRYDPI SMLWSYLPTDIKFLSDKVYYFITLKAIPQTYRFIDTQITNLSGMLWYTFIVRINKRYCPY LLRWHWTFLIGLEFLERPFIFVQDRLIYYLNNILIPNSYFREAELVTNLLITLVAAQYIF IILGMLHALCGQYFYFPFLTENTELHIGLRPKDSIYSGGHTIWQNKRAYMISRQASSKLK KYRFGTIRSAYSKLPRLWYGWLGRGTLD |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LSSVLSLLINIDQETILDFLGINGPFNSEDYSYLFGTSQVSTPVSLETFKLIIQSIWEHYQHGLGFVDIENIALFILVIRFIFLSKKYNIKTGFFITCIGLGAGYLWYMHLRDLAYYYMRTLWMCPLTHNLAYDFSEIFYQQRSEFSKAGTRFDSNSFYGPAVRAFTDITSNDNYRYDPISMLWSYLPTDIKFLSDKVYYFITLKAIPQTYRFIDTQITNLSGMLWYTFIVRINKRYCPYLLRWHWTFLIGLEFLERPFIFVQDRLIYYLNNILIPNSYFREAELVTNLLITLVAAQYIFIILGMLHALCGQYFYFPFLTENTELHIGLRPKDSIYSGGHTIWQNKRAYMISRQASSKLKKYRFGTIRSAYSKLPRLWYGWLGRGTLD | |||||||||||||||||||
1 | 3rkoB | 0.09 | 0.06 | 2.36 | 1.20 | CNFpred | --FNIGFNLVLDGLSLTMLSV-----------------------VTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLA-DNLLLMYLGWEGVGLCSYLAMKAFVVTRVGDVFLAFALFILYNELLNFREMVELAPAHFADGNNMLMW--ATLMLLGGAVGKS-----AQLPLQTWLADAM----AGPTPVSALIHAATMVTAGVYLIARTHGLFLMTVLHLVGIVG----AVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQ--AWDAAIFHLMTHAFFKALLFLASGSVILAC------------------------------------------------------------------------------- | |||||||||||||
2 | 3wajA1 | 0.09 | 0.09 | 3.26 | 1.18 | PROSPECTOR2 | SVLVIAALINPWNSVFTWTVRLGGNFPHRIWFDPFTYYPYGSYTHFGPFLVYLGSIAGIIFSATSGESLRAVLAFIPAPVYLLTREVFDKRAAVIAAFLQVSALGTFLLAYNRYPVIAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVVTFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGRKGMPLAVIVLTALIMGLFFVLTNAVLHFGALFFFGMAGILYSAYRFLKRRSFPEMALWGQNRFAYYFAAVSAVYSALALSVVFIALAAIYPTYILAD----------------AQSSYAGGPNKQWYPDGEKYDEYYLQLYPTPQSNKEPFSYPFETYGVISWWIANPFQA | |||||||||||||
3 | 6h02A | 0.09 | 0.09 | 3.26 | 0.83 | SPARKS-K | KIALLCNAYSTNGALVETIYGIPLPGTNCMASGSITPLPMNDSLTVHAKMSLIHSIATRVIKLLAPALVETYSRLLVYMEILPTVFKSHAWGILHTLLEMFSYRMIQPHYRVQLLSHLHTLAATNQNQLHLCVESTALRLITQPQFTRFLSDPKLSAESEELNRALILTSIQGTWCKDILQTIMSFTPHNWASHTLSCFPGPLQAFFKNLKKNVEEEYRKWNDIITHFWKMLLETDHIN------QIGYRVLERIARALVAHVRTFADFLVYEFSTSALNKCIEILNDMVWKYNIVTLDRLILCLAEAQVCYFIIQLLLLKPNDFRVKENSPEH--------WLQNDWHTKHMNYHKKYPEKQVDPPVQIQSPYLPIYFGNVCLRFLP | |||||||||||||
4 | 5lj3H | 0.09 | 0.08 | 2.94 | 0.98 | FFAS-3D | IRSHVSPIISLTQESHRDLFQVNILIGRDIICKNVVDFTLNNGRLIPALSALIALLNSDIPD-IGETLAKELMLMFNILQCLSILFLYDVIHEIVILQI--------LLLLLEKLRLVIAVMKICWKLALVSKKTHDMIWEKLRYILQTQELSSTLRESLETLFEIRQKDYKSCENFNELTMAFDTLRQKLVEFKKKIYLVLKSSLGDEAAHKLLKLKKSVVDIIIKSSLQE--STFSKF---YSILSERMITFHRSWQTAYNETFEQNYTQDI-EDYETDQLRILGKFWGHLISIFIKFLFQELVNELLQLRLNSSKLDEHIRYSIN--FFTAIGLGLLT--EDMRSR--------------------------------------- | |||||||||||||
5 | 3jacA | 0.14 | 0.10 | 3.36 | 0.35 | HHpred | ------------------------------HDILHTKYRAATDVLADIVDIIIFGFWAFGKH-SAATDIPQAFGTMVIDRALYLRKTVLGKLAFQVVLVVAI--HIWMFFILPAVT--ERMFSQNAYFVKFALSAYQIRCGYPTRIL---GNF------------LTKK-------YNHLNL---------------FLFQGFR-LVPFLV--------ELRAVMDWV---------------WTDTTLSLSNWVEDIYANIFIICRETEKK--YPQPKQKKKKIVKYGMGGIILFLIAIIWFPLLFMSLRSVVGVVNQPITVTLKLGGYEP--LFTMTPQAYEELSQQFDYPLAMQFISQYSPEDIVQIEGSSGALWR--------- | |||||||||||||
6 | 3zheA | 0.11 | 0.10 | 3.70 | 0.64 | MUSTER | ---------QKSDEVTEKFKRY------NQLEKYGQTENVHSPVMAMLRRKGRKQLIEIMKRDGDCTSSINKLWIVGYYHPFQFFIRDKEKNMAIAVLLTMFCGELQEMLSPALWNMYIGDFHR-CLAVGYYSRAIDLDPNQGRAFHVLAGLRADLNVAQKLRLMILGQLADAPY--KKGTELLEYLKFPQKESTDKLMVDFVIWALNEKSK--RMDYQMTGIKIVNEFKAEIEKLEFDWSLIMSTCRLASKLAMKKFGFQQFYNCFDTISTLYITTISSKCLLAEAISWISDSAEILGHLPHFQKLSVFAKTKW---LNDLVMNHI-----NSVFTSMSLTPSISMTSFLLNGPISEPNVEFLSQLINYLVSVPPMEII---REESG | |||||||||||||
7 | 4he8F | 0.10 | 0.08 | 2.85 | 1.15 | CNFpred | --MALLGTILLPLLGFALLGLFGKRMREPLPGVL----------ASGLVLASFLLGAGLLL-SLLLDNLSGFMLLIVTGVIHVYAIGYMGYSRFFAYFNLFIAMMLTLVLADSYPVMFIGWEGVGLASFLLIGFYADSARKAFIVNRI---------GDLGFMLGMAILWAL--YGTLSISELKEAMEGPLK--NPDLLALAGLLLFLGAVGKSA-GPTPVSALIHAATMVTAG---VYLIARSSFLYSVLPDVSYAIAVVGLLTAAYGALSAFGQTDKIVAYSTISQLGYMFLAAGVGAYWVALFHVFTHAFKALLFLASGSVIHA------------------------------------------------------------- | |||||||||||||
8 | 3jacA | 0.13 | 0.10 | 3.43 | 0.47 | HHsearch-2 | FFHDI---LHTKYRAIVDIIII----IFG-FW-AFGKHSAATDI--------ASSLSD-DQVPQAFLFMLLVQGTMVIDRALYLRKTVLGKLAFQVVLVAIH---IWMFFILPAVMFSQNAVAQLWYFVKFALSAYQIRCGYPTRIL---GNF------------LTKK-------YNHLNLF---------------LFQGF-RLVPF--------LVELRAVMDWV---------------WTDTTLSLSNWVEDIYANIFIIKRETEKKYPQPKGQK-KKKIVKYGMGLIILFLIAIIWFPLLFSLIRSVVGVVNQDVTVTLKLGGYEP--LFTMTPQAYEELSQQFDYPLAMQFISQYSPEDKQELYDITLRFWWVIELQDCKA | |||||||||||||
9 | 2ynsA | 0.08 | 0.08 | 3.03 | 0.82 | Neff-PPAS | VPRFVQFLTREDQFEAAWALTNIASGTSENTKVVIDHVKLLGSSSDDVREQAVWALGNVAGDS---PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG-IIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGD------------VNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM----- | |||||||||||||
10 | 3jacA | 0.12 | 0.10 | 3.36 | 0.41 | HHsearch | GGGGGGGGGGGGGGGGGGFF----------HDILHTKYRAATDVLADIVDIIFWAFGKHSA----ATDIAQAFGTMVIDRALYLRKTVLGKLAFQVVLVVAIH--IWMFFILPAVT--ERMFSQNAYFVKFALSAYQIRCGYPTRIL---GNF------------LTKK-------YNHLNLF---------------LFQGF-RLVPFLV--------ELRAVMDWV---------------WTDTTLSLSNWVEDIYANIFIKCSRETEKK-YPQPKQKKKKIVKYGMGLIILFLIAIIWFPLLFMSLRSVVGVVNQPITVTLKLGGYEP--LFTMTPQAYEELSQQFDYPLAMQFISQYSPEDIVQIEGSSGALWRIFQRDLAK- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |