>PF17060 (375 residues) LDLVWPEVDEKAQGFIYAKDFPLVVSRMEEILNRGKLERDRAQLVSETGREILRKFGSDQ EFFKVYKEDFRELFDGLVGTSFKSAVKSCAGDGVLDRLQDSQAVDGIQDEKTSSHALQEE VMRLREQVRVLSSKNDEKDREITARDEIIADLQGKDASPAGSPRSLQRMRTLQARVTSLE DELSFRDEVIREKDRELLNLTKRVGEFKDKYQFLEREFQFYKGHREQKSPDSIKEATRHE FIISELRRKITEQSEIIGQMRMQVEAKPGALHPQGIGSTAGLPLNLPLRLVLRLIIGAIL AYLAFDIGIRSLKAVGGLFGSSSPATLTPKSELSWWEQNTLLSKLLWFFKDLFDTYNLDA GRDEVVSANYDKLFG |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LDLVWPEVDEKAQGFIYAKDFPLVVSRMEEILNRGKLERDRAQLVSETGREILRKFGSDQEFFKVYKEDFRELFDGLVGTSFKSAVKSCAGDGVLDRLQDSQAVDGIQDEKTSSHALQEEVMRLREQVRVLSSKNDEKDREITARDEIIADLQGKDASPAGSPRSLQRMRTLQARVTSLEDELSFRDEVIREKDRELLNLTKRVGEFKDKYQFLEREFQFYKGHREQKSPDSIKEATRHEFIISELRRKITEQSEIIGQMRMQVEAKPGALHPQGIGSTAGLPLNLPLRLVLRLIIGAILAYLAFDIGIRSLKAVGGLFGSSSPATLTPKSELSWWEQNTLLSKLLWFFKDLFDTYNLDAGRDEVVSANYDKLFG | |||||||||||||||||||
1 | 5xg2A | 0.11 | 0.07 | 2.38 | 1.28 | FFAS-3D | -----------------IEEIRAREEERNALVVRLGEIDRTFAVAREEFDTVVKELEEARKSLYEGEARIKRAEEEKERLKILTGEARLPG------------------LRERAENLRRLVEEKRAEISELERRLSSITSQSFELRIKLSDLEKE------LELARKDLEKVLAEERAVREEIEVAKRRINELDTLIERERGELAKLRGRIERLERKRDKLKKALENP------EARELTEKIRAVEKEIAALREELSRVEGKLE-------------------------------------------------------------------------------------------------------------- | |||||||||||||
2 | 6el1O | 0.08 | 0.07 | 2.73 | 1.62 | Neff-PPAS | -------------PDINFKIFSQGVKNISHLAQFKTTG---VEVLQEKALRVSLYSQRLDVIVRESLSSLQVKLENTL--------------ALTYFTTLEEIDEALISQDIDEESKSEMRKERINIIKNLSNDITQLKQLFIEKTELLDKSSSDLHNVVIIEGTDKVLQAEQLRQKQLTEDIATKELERKEIEKKRDKIIEALDVIREHLVDAFKDLIPTGENLSELDLKQSLEITKKLLGQFSEGLKYIDLTDARKKLDNQIDTASTRLTELNRQLEQSEKLIAGVNAVIKIDQEKSAVVVEAEKLSRAWHIFIHEITALQGTSLNEV------ELSKPLIKQQIYLESLIKQL------------------- | |||||||||||||
3 | 6ek4A | 0.10 | 0.08 | 2.89 | 1.20 | PROSPECTOR2 | VVY----------PEINVKTLSQAVKNIWRLSHQQKSG------IEIIQEKTLRISLYSRDLDEAARASVPQLQTVLRQLPPQDYFLTL-------TEIDTELEDPELDDETRNTLLEARSEHIRNLKKDVKGVIRSLRKEANLMASRIADVSNVVILER----LESSLKEEQERKAEIQADIAQQEKNKAKLVVDRNKIIESQDVIRQKKELIKQAIKQGVEKKILGNISKGLKYIELADARAKLDERINQINKDCDDLKIQLK----------------------------GVEQRIAGIEDVHQIDKERTT--------------------LLLQAAKLEQAWNIFAKQLQNTIDGKIDQQDLTKIIHKQLS | |||||||||||||
4 | 6ek4A | 0.10 | 0.09 | 3.22 | 0.84 | SPARKS-K | ----------VVYPEINVKTLSQAVKNIWRLSHQQK-------SGIEIIQEKTLRISLYRDLDEAARASVPQLQTVLRQLPPQDYFLTLTEDTELEDPELDDETR-----NTLLEARSEHIRNLKKDVKGVIRSLRKEANLMASRIADVSNVVILERLESSLKEEQERKAEIQADIAQQEKNKAKLVVDRNKIIESQDVIRQKKELIKQAIKQGVEIAKKILGNISKGLK----------------YIELADARAKLDERINQINKDCDDLKIQLKGVEQRIAGIEDVHQIDKERTTLLLQAAKLEQAWNIFAKQLQNTIDGK---------IDQQDLTKIIHKQLDFLDDLALQYHSMLLS------------- | |||||||||||||
5 | 4l3iA | 0.13 | 0.11 | 3.91 | 1.25 | FFAS-3D | -----------------IVCLQKALNHLREIWELGIPEDQRLQRTEVVKKHIKELLDIAEE-----ESLKERLIKSI--SVCQKELNT---------LCSELHVEPFQEEGETTILQLEKDLRTQVELRKQKKERKQELKLLQEQQELCEILCPHYDIDSASVPSLEELNQFRQHVTTLRETKASRREEFVSIKRQIIQNEAVCEGLRTQIRELWDRLEEEREAVATISGSKAKVRKALQLEVDRLEEVIEAIRVELVQYWDQCRQAFAPFCAEDYTESLLQLHDAEIVRLKNYYKELFEGVQKWEETWRLFLEFERKASDPNRFTNRGGNLLKEEKQRAKLQKLPKLEEEL-----------KARIELWEQEHS | |||||||||||||
6 | 4y66C | 0.12 | 0.06 | 2.08 | 0.35 | HHpred | --------------------------------------------TSDEKERLLEEMLKRGEIYSN-KTIETLSKPGISSMVIKNVLQALVNEDLVDTDKIGASTYYW--CFA--------------------------SKRSQAARTELAR-------------LQKALEEQTNFIDKATARIEELKV-GREETEERSSLLKEKLALQVKLEEQRGTFRDLLKNDP-----DVAQKLRNY--TDIAKQEANLWTDNIFCLQKYMLTKLQMDKKTGI--TGEF--------------------------------------------------------------------------------------------- | |||||||||||||
7 | 1sjjA | 0.11 | 0.10 | 3.80 | 0.93 | MUSTER | IRRTIPWLENRAPENTMKPPKVQEKCQLEINFNTTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEI-RRLERLDHLAEKFRQKASIHESDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELD--YYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVGRISIEMHGTLE-YEKSPKIDQLEGDHQQIQEALIFDNKHTEHIRVGWEQLLT | |||||||||||||
8 | 1hciA | 0.12 | 0.09 | 3.23 | 0.84 | CNFpred | LEHLAEKFRQK------ASTHETWAYGKEQILLQKDYESASL----TEVRALLRKHE-------AFESDLAAHQDRVE--QIAAIAQELNEL-----------------DYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHL------EFAKRAAPFNNWMEGAMEDLQ-SIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQE--------------------ELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITG--------ALEDQMNQLKQYEHNII-----------NYKNNIDKLEG | |||||||||||||
9 | 4ll7A | 0.14 | 0.03 | 1.19 | 0.48 | HHsearch-2 | ---------------------------------------------------------------------------------------------------------------------SRVIESLHDQIDMLTKTNLQLTTQSQ-------N------LLSKLELAQSKESKLLENLNLLKNENENLNSIFERKNKKLKELEKDYSELSNRYNEQKEKMDQLSKL------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 6ek7A | 0.08 | 0.07 | 2.85 | 1.57 | Neff-PPAS | --------------KLYVRKGLSLPTRQDEVEAYLGYKKIDVAGLEKDIKLLFDEIHNHALNWNDVEQAVLQQSLDLDISTGNEIINLINQMPITLRVKTLLGDITDKQLENITSADHEVASALKDILDDMKGDINRHQTTTENVRKKVSDYRITLTGGELSS--GDKVNGLEPQVKTKYDLMEKSN-----MRKSIKELDEKIKEKRQRIEQLKKDYDKFVGLSFTGAIGMAITGGIFGAKAENARKEKNALISEVAELESKVSSQRALQTALEALSLSFSDIGIRMVDAESALNHLDFMWLSVLNQITESQIQFAMINNALRLTSFQQVITPWQSVGDSARQLVDIFDEAIKEYKKVY--------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |