Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | SDNPFGGTNVVRKQRINLNEKVRTNKFNDDIFIKQLIKRDVGMKNTPTRCNTMNIYRKVKIVSKKKLKGKHVEYFKFPFNTNIKNDSSDLYSLIYMEWLIAITSAFKNYRNRNEEFYIKFLDKLLIFSTDLYCSSACKEILDQLEIQYVDENSLLKVTGVGISLMYDYVINYELKPKDRMPFILSRHKFTNAISYESRFTESLMVRDRGVLKCYYVIEGYLYGCDFA |
1 | 5yd0A2 | 0.08 | 0.07 | 2.91 | 0.71 | SPARKS-K | | ----TKPRICSLSSSLYCRSLTSKLPLDSKETFEFLERKKTCVKNDLESNPAFEIFQSERLEYGQRLPFSESASIEFKQ-----FSTRRAHEYIKSVIPEYISAFANT-----QGGYLLFSKRVLGCPKDNVDRDSLKAVVNEAISKL----PVFHFCSSKVSYKTRVIDVFKEGNLYGYLCVIKVERFCCAVFSWMADKENGVYSLNTEKWVRMMVDI-------- |
2 | 5husA2 | 0.13 | 0.04 | 1.38 | 0.51 | FFAS-3D | | -------------------------------------------------------------------------------------DKDEL-----NSWMPEIVKLVESKVERLPGSFCEALDATVRFHAGKSTIQHINTLFEHNGVHATLVRNSVIVQKD------------------------------------------------------------------- |
3 | 3drrA | 0.10 | 0.06 | 2.31 | 0.30 | HHpred | | ----------------KPGMDGKQWPLTVEICTEMEKEGKISKKKDSAGLKKKKSVFSVPLDEFRKYTAFPGIRYQYNVLPQGWKGSPAIFQ-------SSMTKILEPFRKQNDIVICQYMDDLYVGSLEGQHRTKIEELLLRWGLTTPDKKHGYELHPDKWTVQPIVL---------------------------------------------------------- |
4 | 4es8A1 | 0.09 | 0.07 | 2.85 | 0.61 | MUSTER | | PDDLMNFKGTWEVSADGSSGRFFSKGATDSYVFHLIPAKDVKKPGWREHNEVKDSYQSIAARYKTSTTAPYSVAFKVN-TKSLIKDHD--YKITFEQ------------GQIASGITVDYR--IGSAFNKTTDDSFKISDESKY-------ASNVKIEGEEQGF-------KQREQGDKTISFRTLKEGPMSLVLLSKVEKKP---QGDLDVEFKNLK--II--DVT |
5 | 3lx1A | 0.12 | 0.08 | 2.83 | 0.73 | CNFpred | | ---------------------------NMDQFKKILKRGKA---------DTLILRKFLEITFEG----TAKRTFRLPL-LELELPELPFTAKVV-LLGEVLKEGIKDASLVSDAIKFIAKENEFTMKAEGE----------EVEIRLTLEEGLLDLEVTKSAYGIRYLSDMGIGKADEVILRFGN---EMPLQMEYMIR--------DEGRLTFLLAP-------- |
6 | 1vt4I | 0.12 | 0.11 | 3.74 | 1.15 | HHsearch-2 | | QDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQEEMQKFVEEVLRINYKFRQPSMMTRMYIE-QRDRLYN--DNQFAKYNVSRLQPQALLELRPAALDVCLSYKVQFKIFWLNLKN-------CNSVLEMLQKLLYQIDPNWTSRSDHSKSKPYENCLL--VLLNVQNAKA------WNAFNLSCKILLTTRFKQVTDFLSAATT-TH-----ISLDHHSM |
7 | 6fu4A | 0.09 | 0.08 | 3.22 | 0.76 | Neff-PPAS | | FQYGKGFSRQILFLRDQAQKRFLDAYDLREDLTRQVRTALAANPEEPNALDGKDELFVDQPALGSNDKGRFSLYWAQATPGQLESESIESELADTGPSGAAYNAWYTCPKESGQPCVLDPRQLLTSIAFPLELLSNLQALSEQGNRELYDGVGQVGILSPAGLFAGNSLLGKNLAKADP--------QHAGELLQLLAAGKSRLFNENDDLKVLQPLQPIPGAKPWG |
8 | 1wryA | 0.06 | 0.03 | 1.16 | 0.30 | HHsearch | | -------------------------------------------------------------------------------------------------------------GSS-----GSSGMVIRVYISSGSTAQDVLGFLEANKIGFEEKD----IAANE-E-NRKWMRENPATGYPLPPQIFNESQYRGDYDAFFEARENAVLGLTAPPG---SKEAEV-SGPS- |
9 | 4xzjA | 0.07 | 0.06 | 2.50 | 0.66 | SP3 | | ----------------GPFDAIKQPNRSEEEVTQLAEDFKDWSKASNG--------WRYSFITANEKEA--VEDFSISGYQTADTSTWGVAGADARQYIRTVKSALNKLPKYKLSLLNKLEEGVLVEPAFTSTSTL-PEVAKR----FSVVHPNSPQRLKRVLFEVKINQGHTIAG-------LSEYSKEAEVLFAAHFRITQIERTSNHTYIGVETVKASAVKNTQ |
10 | 2ddrA | 0.09 | 0.09 | 3.32 | 0.78 | PROSPECTOR2 | | NDTNLYPNWGQTERADLIGAADYIKNFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEKIQYVFAKGCLSNKGQAESPASVRTNQLKEIQDFIKNKNIPNNEYVLIGVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDATTN-------SIAKYNFPDSPAEYIIASKDHANPSYIENKVLQPKSP-------QWTVTSWFQKYTYNDY |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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