Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | FKDAFTIDSLLSYSGEAHNFSLNSRADVKMKKSFHTNVKQQIDKIIRHMMTNLNTYDLNTICSTFNLISGDVEYQHKLVIAHDIILFIDDFSRTPFIISALFNNQGIRNDVLGGTIKEILLHQCTIDKDIYKNNPHLVGYYNKIIDNFELHPRERSLKDACTSLIGNFKVFEDRTFNSAIFPNMYSVRVLCHYMDWDYTYNEFVRSVLYPRLKETRNPLYAVYMFVVAFNALRVFGDVESVNVVFDKLKEFMSDASDLSIASYLFIKQIDPEGARKWYRSQIESIGH |
1 | 3l6aA | 0.12 | 0.10 | 3.67 | 1.00 | FFAS-3D | | ----------------------------------KEELLKLTETVVTEYLNS---GNANEAVNGVREMR--APKHFLPEMLSKVIILSEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQC----PKLEVDIPLVKSYLAQFAARA-IISELVSISEWLTELFQQSKVNMEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIIKDNISPKLHVDKGFVNILMTSFLQYISSEVNAPKQLLLSFKPVMQKFLHDHVDLQVSALYALQVIEEEAFLAWKEDITQEFP- |
2 | 3w3tA | 0.08 | 0.07 | 2.87 | 1.03 | CNFpred | | ------LPSLLNSLPRFLDD---------GKDDALASVFESLIELVELAPKLFKD-MFDQIIQFTDMVIKNLEPPARTTALELLTVFSEN------APQMCKSN----QNYGQTLVMVTLIMMTEVSAAEWI-EEVTYDHARQALDRVAL---KLGGEYLAAPLFQYLQQMITSTEWRERFAAMMALSSAAEGCADVLIEIPKILDMVIPLINDPHPRVQYGCCNVLGQISTDFSIQRTAHDRILPALISKLTSTSRVQTHAAAALVNFSEFASKDILEPYLDSLLT |
3 | 1vt4I3 | 0.10 | 0.06 | 2.33 | 1.20 | HHsearch | | ------------------------------------------------------EYALHRSIVDHYNIPKTFDSDDLIYFYSHIGHHLKNIEHPFRMVFLDFREQKIRHDSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS-KYTDLL-RIALMAEDE------AIFEEAHKQVQRGGG----------------------GGGGGGGGGGGG----G--GGGGGGGGGGG-------GGGGGGGGGGGG------GGGGGGGGGGGGGGGGG- |
4 | 5h7cA | 0.09 | 0.08 | 3.24 | 1.02 | PROSPECTOR2 | | KFNNLNEEQRNAFIQSL------KDDPSQSANLLAEAKSLNVNQAVKQLAEKAKEATIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEELEQQSAFYEIDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVAKEATDKELVEHIEKILEELQS |
5 | 5vchA | 0.11 | 0.10 | 3.80 | 0.70 | SPARKS-K | | INQAKLGPEITLAALKVASEEIDVEDTNEDENTPALTALRLISNASGEL-------SPSQVGVPIIEHLPTLNPFERRSILLAISVLVTGLSQFDKIIPATVTGKDSEAVVQLAALKCIVQLSTNLQDEVARYHEQYLPLVIDIIDSAKHVVIYKYATLALDGLLEFIKYLDPNKLQQSPKLRAAIVSAIGSCAFAAGSYFKTSVQYLQQFIQNVSQILKALTFENISTRAVKSAAFAEYAEPLVNAAYEAIKDSARLRESGYAFIANAKAPFLQTIIPEIFKTLEQ |
6 | 3sf4A | 0.09 | 0.08 | 3.22 | 0.97 | FFAS-3D | | -----DCRAGVSFFEAA---VQVGTEDLKTLSAIYSQLGNDYAKALEYHHHDLTLARAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNFGGEFPEEVRDALQAAVDFYEEN-LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAYTALGNHDQAMHFAEKHLEEVGD |
7 | 6bq1A | 0.17 | 0.16 | 5.26 | 0.45 | HHpred | | ---SLSEKQWKDNVNLAWSVQLPARFKNAIGNEVTRLVRLDPGEAIKFLVTWHTIPELSDPPTGLSYFSSMY-PPHPLTAQYGVVLRSFPPDAILFIVQALRYDKGYVREYILWAKSQLLAHQFIWNMKIYLDDPDIGDLLDQLVEEISFYQREFDFFNKITNVSAIIKPYPKGDRKKACLSALSEVKVQAIVLDIDY-----------PMQSAAKAPYLAKF----WQAAIFKVGDDCRALQIIDLFKNIFQSRDQLGMYDY-FTRQYGDESTLAFQQARYNFIRS |
8 | 1b3uA | 0.09 | 0.09 | 3.40 | 0.72 | MUSTER | | ISHEHSPSDLEAHFVPLVKRLAGGDWFTSFSVCYPRVSSAVKAELRQYFRNLCSDDTRRAAASKLGEFAKVLELDNVKSEIIPMFSNLAQDSVRLLAVEACVN-QLLPQEDLEALVMPTLRQAAE-SWRVR---YMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA-------EVRAAASHKVKEFCENLS-ADCRENVIMSQILPCIKEDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDEPEVRLNIISNLDCVNEVGIRQLSQSLLPAIVE |
9 | 3w3vA | 0.08 | 0.07 | 2.78 | 1.01 | CNFpred | | ------LPSLLNSLPRFLDD---------GKDDALASVFESLIELVELAPKLFKD-MFDQIIQFTDMVIKNKLEPPARTTALELLTVFS-----ENAPQMCKSN----QNYGQTLVMVTLIMMTEVDAAEWI-EEVTYDHARQALKRVALKLGGEYLAAPLFQYLQQMITS---TEWRERFAAMMALSSAAKGCADVLIEIPKILDMVIPLINDPHPRVQYGCCNVLGQISTKFSIQRTAHDRILPALISKLTSTSRVQTHAAAALVNFSEFASKDILEPYLDSLLT |
10 | 2pffB | 0.13 | 0.11 | 4.00 | 0.88 | HHsearch-2 | | DDEPTTPGKFLGYVSSLVEPSKV----GQFDQVLNLCLTEFIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-AIFGGQGNTDDYFEELRDLYQTYHVLV-GDLIKFSAETLSEL-------------------IRTTLDAEKVFTQGLINTPDKDYLLSIPISCPLIGV----IQLAHYVVTAKLLLKGATGHSGLVTAVAIAEDSWESFFVSVRKLFFIGVRCYEAPSEDSLEPSPMLSISNLTQEQDYVNKTNSHLPA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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