>PF16980 (441 residues) LSVWWGIPFAGLLLSIALCPLLTPHFWHHHFGKVAIAWALAFLLPCAAYFGIGTAAGGAV HALVSEYIPFIILITSLFVVAGGICVRGNLQGTPALNTGLLALGTALASLMGTTGAAMLM IRPLIRANDNRKHAAHIVVFFIFLVANAGGSLTPLGDPPLFLGFLKGVDFFWTLKNIFPE TLFLCVTLLLIFYALDTYYYRNREGELLPTPDPTPDSAIRFEGKLNFLLLAAIIGLVLMS GFWKSGIAFSIFGVEVELQNLIRDALLLVVIFVSLRLTPETARSGNDFSWGPIQEVAKLF AGIFITIIPVIAMLRAGQSGAFATIVSAVTDASGQPINAMYFWAAGILSSFLDNAPTYLV FFNTAGGDAQVLMTTLASTLAAISCGAVFMGANSYIGNAPNLMVKAIAEERGIKMPSFFG YMAWSCAILIPLFVLMTFFFF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LSVWWGIPFAGLLLSIALCPLLTPHFWHHHFGKVAIAWALAFLLPCAAYFGIGTAAGGAVHALVSEYIPFIILITSLFVVAGGICVRGNLQGTPALNTGLLALGTALASLMGTTGAAMLMIRPLIRANDNRKHAAHIVVFFIFLVANAGGSLTPLGDPPLFLGFLKGVDFFWTLKNIFPETLFLCVTLLLIFYALDTYYYRNREGELLPTPDPTPDSAIRFEGKLNFLLLAAIIGLVLMSGFWKSGIAFSIFGVEVELQNLIRDALLLVVIFVSLRLTPETARSGNDFSWGPIQEVAKLFAGIFITIIPVIAMLRAGQSGAFATIVSAVTDASGQPINAMYFWAAGILSSFLDNAPTYLVFFNTAGGDAQVLMTTLASTLAAISCGAVFMGANSYIGNAPNLMVKAIAEERGIKMPSFFGYMAWSCAILIPLFVLMTFFFF | |||||||||||||||||||
1 | 4r0cA | 0.10 | 0.09 | 3.37 | 2.07 | SPARKS-K | --------------------------RLPHPTLLFVWFCLLLLPLTAVLGADADGLRYLFTTLVGNFTAPLGVVLVAMLGLGVAEQSGLSSGG--ALVFTVAFAGVLSSLTVD--AGYVVLIPLAGLVFQLA-GRPPIAGIATAFAAVSGPVDATLAGLSTEAAHRTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDAPQIHSRAMKWTGLTLAILLAGLALLVLPLRHPDTGSVLGSPFIHGLVVIVALIAGICGAVYGRVSGQNSGAVITAMEVTMASAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLGAVPKVVLLLLFVVLTALINLMISASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMP-YFVLVLGFARRYQ-PETGIGTLIALMLPYSLTLLLGWSVLLG | |||||||||||||
2 | 4r0cA | 0.10 | 0.10 | 3.50 | 2.33 | FFAS-3D | LP----HPTLLFVWFCLLLLPL------------TAVLGGLRYLFTTLVGNFTGFAPLGVVLVAMLGLGVAEQSGLLSVSLASLVRRSSGGA----LVFTVAFAGVLSSLTVD-AGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSANLLVGPVDATL-------AGLSTEAYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDAPQIHSRAMKWTGLTLAILLAGLALLVLPNDAPLRHPDTGLVVIVALIAGICGAVYGRVSGQFRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLGALTVVLLLLFVVLTALINLMISASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYF-VLVLGFARRYQPET-GIGTLIALMLPYSLTLLLGWSVLLG | |||||||||||||
3 | 4r0cA | 0.10 | 0.09 | 3.36 | 2.07 | HHpred | ------LLFVWFCLLLLPLTAVLGALDTATHPLTETI--------TA--HSDADGLRYLFTTLVGNFTGPLGVVLVAMLGLGVAEQSGLLSSSGGALVFTVAFAGVLSSLTV-D-AGYVVLIPLAGLV-FQLAGRPPIAGIAAFAVSGGFSANLLVGPVDATTEAAHIDAGNYW-FIIASTFLV----TGLVTLITRTLTEPRLAHANTVAD--ASVDAPQIHSRTLAILLAGLALLVLDAPLRHPDT-GSVLGSPFI-HGLVVLIAGICGAVYGRVSGRNSAVITAMEVTYL----VLMFFAAQFVA-WFN-----YSQLGLLLAVKGAAALKVVLLLLFVVLTALINLMISASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMP-YFVLVLGFARRYQPET-GIGTLIALMLPYSLTLLLGWSVLLG | |||||||||||||
4 | 4r0cA | 0.10 | 0.10 | 3.66 | 1.75 | MUSTER | LP-----PTLLFVWFCLLLLPLTAVLGALDVTATH----TITAHSLLDADGLRYLFTTLVGNFTGF--APLGVVLVAMLGLGVAEQSGLLSSSGGALVFTVAFAGVLSSLTV-DAGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSANLLVGPVDATLAGLSTEAAHIITGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDAPQIHSRAMKWTGLTLAILLAGLALLVLPNDAPLRHPDTGSVLVVIVALIAGICGAVYGRVSGQNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLGALTVVLLLLFVVLTALINLMIGASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMP-YFVLVLGFARRYQ-PETGIGTLIALMLPYSLTLLLGWSVLLG | |||||||||||||
5 | 5uldA | 0.14 | 0.13 | 4.39 | 2.24 | CNFpred | LPFEHNVVLGISMLAFIAVLWLTEAL----HVTVTAILVPVMAVFFGIFEALNNFANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMSVAVFMLFGVTALLSMWISNTATAAMMLPLVLGVLSKV--YVFVLLGVAYSASIGGIATLVGTGPNAIAAAEGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPT------LNGMFELDRAPVNWDKGKVVTLGIFGLTVFLWIFSSPIN----------------SFDTLVALGAILMLSFARVVHWKEIQ----KTADWGILLLFGGGLCLSNVLKQ-----TGTSVFLANALSDMVIFVVILVVATFVVFLTEFTSNVATTTLLIPVFATVAEAFGMSPVLLSVLIAVAASC-AFMLPVATPPNAIVFAS------GHIKQSEMMRVGLYLNIACIGLLTAIAM | |||||||||||||
6 | 4f35D | 0.17 | 0.14 | 4.63 | 3.30 | HHsearch-2 | HRNSLIVLA-DVALFLALYHFIALWLTEALHVTVTAILVPV-AVF----FGI----FETQAA-LNNFASIIFLFLGGFALAAA-HHQGLDKGKS-VAF-LFGVTALLS-WI-SNTATAA--LPLVLGV-LSKVDADKQLLGVAYSASIGGIATLVGSPPNAIAAEVGLSFTDW-KFGLPTAL-P--A-----IAILYFLLV----------------NWDKGKVVTLGIFGLTVFLWIFSSPIN---------AALGGFKSFDTLVALGAI-LLSFARVVHWEIQKTADWGVL----LLFGGGLCLSN-VLK-----QTGTSVFLANALSDVSIFVVILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGS-PVLLSVLIAVAASCA-F-LPVATPPNAIVFASGH-----I-KQSE--RVGLYLNIACIGLLTAIAL | |||||||||||||
7 | 4r0cA | 0.08 | 0.08 | 3.25 | 2.71 | Neff-PPAS | PHPTLLFVWFCLLLLPLTAVLGALDVTATHTITAHSLLDADGLRYLFTTLVGNFTGFAPLGVVLVAMLGLGVAEQSGLLSVSLASLVRRSSGG---ALVFTVAFAGVLSSLTVDAGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSANLLVGPVDATLAGLSTERTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDAPQIHSRAMKWTGLTLAILLAGLALLVLPGSVLGSPFIHGLVVIVALIAGICGAVYGRVSGQFRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLGALKVVLLLLFVVLTALINLMIGASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMP-YFVLVLGFARRYQ-PETGIGTLIALMLPYSLTLLLGWSVLLG | |||||||||||||
8 | 4f35D | 0.17 | 0.14 | 4.56 | 4.67 | HHsearch | HRNSLIV-LADVALFLALYAFIAVLLTEALHVTVTAILVPV-AVFF---GIFE-----TQAA-LNNFASIIFLFLGGFALAAA-HHQGLDGKS--VAF-LFGVTALLS-WI-SNTATAA--LPLVLGV-LSKVDADKQLLGVAYSASIGGIATLVGSPPNAAAAEVGLSFTDW-KFGLPTAL---PA-----IAILYFLLV----------------NWDKGKVVTLGIFGLTVFLWIFSSPINAAL--GGFKSFDT-------LVALGAI-LLSFARVVHWEIQKTADWGVL----LLFGGGLCLSN-VLK-----QTGTSVFLANALSDVSIFVVILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGS-PVLLSVLIAVAASCA-F-LPVATPPNAIVFASGH---I---KQSE--RVGLYLNIACIGLLTAIA- | |||||||||||||
9 | 4r0cA | 0.09 | 0.09 | 3.33 | 2.20 | PROSPECTOR2 | RLPHPTLLFVWFCLLLLPLTAVLGATITAHSLLDADGLRYLFTTLVGNFTGF----------------APLGVVLVAMLGLGVAEQSGLLSSSGGALVFTVAFAGVLSSLTVD--AGYVVLIPLAGLV-FQLAGRPPIAGIAFAAVSGGFSANLLVGPVDATLAGIDPDRTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDAPQIHSRAMTLAILLAGLALLVLPNDAPLRHPDTGSVLGSPFIHGLVVIVALIAGICGAVYQFRNSGAVITAMEVTMASYLVLMFFAAQFVAWFNY------SQLGLLLAVKGAAVPKVVLLLLFVVLTALINLMISASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMP-YFVLVLGFARRYQ-PETGIGTLIALMLPYSLTLLLGWSVLLG | |||||||||||||
10 | 4f35D | 0.17 | 0.13 | 4.38 | 2.47 | SAM | ------------LGIS-LAFIAVLWLTEALHVTVTAILVPV-AVFFGIFE---------TQAALNNFANSIFLFLGGFALAAA-HHQG---KS--VAF-LFGVTALLS-WI-SNTATAA--LPLVLGV-LSKVDADKQRVLLAYSASIGGIATLVGSPPNAIAAEVGLSFTDW-KFGLPTAL---PA-IAILYFL---------------------LNWDKGKVVTLGIFGLTVFLWIFSSPIN---------AADT-------LVALGAI-LLSFARVVHWEIQKTADWGVL----LLFGGGLCLSN-VLK-----QTGTSVFLANALSDVSHFVVILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGS-PVLLSVLIAVAASCAF--LPVATPPNAIVFASGH-------KQSE--RVGLYLNIACIGLLTA--- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |