>PF16946 (304 residues) DDVSFLRLRQEDPPVHWNSIGSNMDAGGLHGNIGSQIEIDDVRWGNKNRNSGKFKLATIQ AFLRHDELPNWYFGFWNAREDDYKGQFSNQDYSGSNTINEFFVGHIFENWRGNIGTEVMI GSETATERWKTRFKVWQDLRLSDRWSVAGYAYGEYQPQGNQPGNGDLEQYIFETEPAIQY RVNPDLGLYFRPYYYYNRQVRENWGDIVEQEWKVTTGLWKNWYPLLTSMYIGFGQDKIVN ASNSKELFYDGRYKFIGSTISYPVFGEVRLYGEFKASFTKEAGQWTYNGHSWNPFTIVGV TYNF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DDVSFLRLRQEDPPVHWNSIGSNMDAGGLHGNIGSQIEIDDVRWGNKNRNSGKFKLATIQAFLRHDELPNWYFGFWNAREDDYKGQFSNQDYSGSNTINEFFVGHIFENWRGNIGTEVMIGSETATERWKTRFKVWQDLRLSDRWSVAGYAYGEYQPQGNQPGNGDLEQYIFETEPAIQYRVNPDLGLYFRPYYYYNRQVRENWGDIVEQEWKVTTGLWKNWYPLLTSMYIGFGQDKIVNASNSKELFYDGRYKFIGSTISYPVFGEVRLYGEFKASFTKEAGQWTYNGHSWNPFTIVGVTYNF | |||||||||||||||||||
1 | 2jqyA | 0.15 | 0.13 | 4.52 | 1.25 | SPARKS-K | -----------------------EERNDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAANG-----PWRIALAYYQEGP--VDYSAGKRGTWFDRPELEVHYQLENDDFSFGLTGGFRNYGYHNMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTR--VETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRSNWDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLEYA----FEWQDHDEGDSDKFHYAGVGVNYSF | |||||||||||||
2 | 2jqyA | 0.16 | 0.14 | 4.70 | 2.68 | FFAS-3D | -----------------------EERNDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAAN-----GPWRIALAYYQE--GPVDYSAGKRGTWFDRPELEVHYQFENDDFSFGLTGGFRNYGYHNMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDL--NTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFH----YAGVGVNYSF | |||||||||||||
3 | 2jqyA | 0.16 | 0.14 | 4.68 | 3.88 | HHpred | -----------------------EERNDWHFNIGAMYEIENVE-GYGEDMDG-LAEP--SVYFNAA-NGPWRIALAYYQEGP--VDYSAGKRGTWFDRPELEVHYQLENDDFSFGLTGGFRYVDEPNMQRWKIAPDWDVKLTDDLRFNGWLSYKFANDLN---TTGYADTRVETETGLQYTFNETVALRVNYYLERGFN-MDDSRNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWDWQDDI--EREGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDDEGD-----SDKFHYAGVGVNYSF | |||||||||||||
4 | 2jqyA | 0.16 | 0.14 | 4.70 | 1.89 | MUSTER | -----------------------EERNDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAANG-----PWRIALAYYQE--GPVDYSAGKRGTWFDRPELEVHYQFLNDDFSFGLTGGFRNYGYHNMQRWKIAPDWDVKLTDDLRFNGWLSMYKFA--NDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHD----EGDSDKFHYAGVGVNYSF | |||||||||||||
5 | 2x9kA | 0.15 | 0.13 | 4.51 | 3.13 | CNFpred | -------------------------RNDWHFNIGAMYEIENVEGYG-----EDMDGLAEPSVYFNAANGPWRIALAYYQEGPV--DYSAGKRGTWFDRPELEVHYQFLENDFSFGLTGGFRNYGTANMQRWKIAPDWDVKLTDDLRFNGWLMYKFANDLNTTG---YADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWDDIEREGADFNRVGLFYGYDFQNGLSVSLEYAFEWQDA----DEGDSDKFHYAGVGVNYSF | |||||||||||||
6 | 2jqyA | 0.16 | 0.14 | 4.68 | 3.81 | HHsearch-2 | -----------------------EERNDWHFNIGAMYEIENVE-GYGEDMDGLA-EP--SVYFNAA-NGPWRIALAYYQEGP--VDYSAGKRGTWFDRPELEVHYQLENDDFSFGLTGGFRYVDEPNMQRWKIAPDWDVKLTDDLRFNGWLMYKFANDLNT---TGYADTRVETETGLQYTFNETVALRVNY-YLERGFNMDDSRNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWDWQDDIE-R-EGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDDEG-----DSDKFHYAGVGVNYSF | |||||||||||||
7 | 2jqyA | 0.15 | 0.13 | 4.43 | 1.86 | Neff-PPAS | ------------------------ERNDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAANG-----PWRIALAYYQE-GPVDYSAGKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFA--NDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEEGHDFNRVGLFYGYDFQNGLSVSLEYA----FEWQDHDEGDSDKFHYAGVGVNYSF | |||||||||||||
8 | 2jqyA | 0.16 | 0.14 | 4.59 | 4.91 | HHsearch | -----------------------EERNDWHFNIGAMYEIENVE-GYGEDMDGLA-EP--SVYFNAA-NGPWRIALAYYQEGP--VDYSAGKRGTWFDRPELEVHYQLENDDFSFGLTGGFRYVDEPNMQRWKIAPDWDVKLTDDLRFNGWLMYKFANDLNT---TGYADTRVETETGLQYTFNETVALRVNY-YLERGFNMDDSRNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWDWQDDIE-RE-GHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDDEG-----DSDKFHYAGVGVNYS- | |||||||||||||
9 | 2f1cX | 0.16 | 0.13 | 4.25 | 1.76 | PROSPECTOR2 | N--------------------------DWHFNIGAMYEIENVG-------------LAEPSVYFNAANGPWRIALAYYQEGPVDYSKRGTWF----DRPELEVHYQFENDDFSFGLTGGFRNKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNT--TGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRW-----------SNDFNRVGLFYGYDFQNGLSVSLEYAFEWQDDK----------FHYAGVGVNYSF | |||||||||||||
10 | 2jqyA | 0.17 | 0.14 | 4.67 | 1.92 | SAM | ------------------------ERNDWHFNIGAMYEIENVE-GYGEDMDGLA------SVYFNAANGPWRIALAYYQEGP--VDYSAGKRGTWFDRPELEVHYQLENDDFSFGLTGGFRYVDEPNMQRWKIAPDWDVKLTDDLRFNGWLMYKFANDLNT---TGYADTRVETETGLQYTFNETVALRVNY-YLERGFNMDDSRNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWDWQDDIEREGH--DFNRVGLFYGYDFQNGLSVSLEYAFEWQDDEGD-----SDKFHYAGVGVNYSF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |