Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | LAIAAITSASLALLGWRRRDVSGAQAFLGLMGAVTVWSLGYALELGSTKEAVKLLWAKTEYLGIVIVPAAWLIFALQYTGRGRVVTRRLLALLAIEPLVTLALVWTNEGHGLIWREVRLVTWGAFSLLDPTHGPAFWVHTAYSYLLLLAGTALLFRAFLRAPTLYRRQVGAILIGALVPWAQNALYLSGLNPFPYLDLTPFTFTITGLAVAWALFRFRLFDIVP |
1 | 4or2A2 | 0.10 | 0.10 | 3.63 | 1.51 | SPARKS-K | | SCLGILVTLFVTLIFVLYRDTPVVKLCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARFMSAWAQVIIASILISVQLTLVVTLIIMEPP---MPILSYPSIKEVYLICNTSLGVVAPLGYNGLLIMSCTYYAFKT-RNVPA-NFNEAKYIAFTMYTTCIIWLAFVPIYFGSYKIITTCFAVSLSVTVALGCMFTPKMYIIIA |
2 | 4or2A2 | 0.12 | 0.12 | 4.12 | 1.49 | FFAS-3D | | -CLGILVTLFVTLIFVLYRDTPVVKLCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIAKPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYPSIKEVYLICNTSNLGVVAPLGYNGLLIMSCTYYAFKT--RNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALGCMKMYIIIAKP |
3 | 3rkoC | 0.08 | 0.08 | 3.03 | 1.32 | CNFpred | | FFHLNLMWILGGVIGVFLA---IDMFLFFFFWEMMLVPMYFLIALWGHRITAATKFFIYTQASGLVMLIAILALVFVHYNGVWTFNY-EYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGLLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVI-QTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERI |
4 | 5ezmA1 | 0.11 | 0.10 | 3.70 | 1.14 | Neff-PPAS | | AAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQHPDASVAARRGWMVACWAAMGVAILTKGLVGIALPGLRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRNPEFPNFFFIHEHWQRRSGSVFYFLPLVIGGFLPWAGIFPKLWTAMRA----RFRPALMAGIWAIAIFVFFSIS-----RSKLPGYIVPVIPALGILAGVALDRL------- |
5 | 6an7D | 0.08 | 0.08 | 3.01 | 1.02 | PROSPECTOR2 | | L--SLILELVRQEIKNRYADTVLGIWWAFLWPILLVLIYTLIFSHLIGTVYAYSIYLSSGIFPWFFFSNSLSRITGIFTEKKFLFTKEVFPVVVIISELINYLIGISLVTLISFITL-------GFEGIKYFYLFPVALYLMIVYSFSIGMVLGTLNVFFRDIKEIIGVFLQIFFWFYPVVSIHHLVFVNYLDLHLYSLLGFLLASPLVFFVSYYFFKKLEKDF |
6 | 4phuA1 | 0.14 | 0.14 | 4.84 | 1.30 | SPARKS-K | | FALGFPLNVLAIRGATAHRLTPSAVYALNLGCSDLLLTVSLPLKAVELPASLCPVFAVAHFAPLYAGGGFLAALSAARYLFPPCYSWGVCAAIWALVLCHLGLVFGLEAPGGWTSLGINTPVNGSPVCLEAWDSAGPARFSLSLLLPLAITAFCFVGCLRAHRRKLRAAWVAGGALLTLLLNASNVASFLYPNLGGSWRKLGLITGAWSVVLNPLVTGYLG--- |
7 | 4oo9A1 | 0.13 | 0.12 | 4.31 | 1.40 | FFAS-3D | | -CLGLLATLFVTVVFIIYRDTPVVKELCYIILAGICLGYLCTFLIAKPKQIYCYLQRIGIGLSPAMSYSALVTAARILAMSSAAQLVIAFILICIQLGIIVALFIMEPPDI------------MVYLICNTTNLGVVAPLGYNGLLILACTFYAFKT--RNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITMCFSVSLSATVALGCMKVYIILAKP |
8 | 3rkoB | 0.11 | 0.10 | 3.56 | 1.31 | CNFpred | | LSVVTGVGFLIHMYASWYMGEEGYSRFFAYTNLFIASMVVLVLADN--LLLMYLGWEGVGLCSYLLI-DVFLAFALFILYLGTLNFRMLMWATLMLLGGAVGKSAQLPLQTWLADAMAG-----------PTPVSALIHAATMVTAGVYLIARTHGLFLM----TPEVLHLVGIVGAVTLLLAGFAALVQTD---IKRVLAYSTMSQIGYMFLALGVQAWDAAI |
9 | 4ikvA2 | 0.09 | 0.08 | 3.23 | 1.11 | Neff-PPAS | | GILGIIIPIIYFVVMYRSPKTSRVIAYIPLFVASAMFWAIQEQGSTIGIHLSPAWFQSLNPLFIIILAPVFAWMWVKLGKRQPTIPQKFALGLLFAGLSFIVILVPGHLSG------------GGLVHPIWLVLSYFIVVLGELCLSPVGLSATTKLAPAAFSAQTMSLWFLSNAAAQAINAQLVRFYTPENETAYFGTIGGAALVLGLILLAIAPRIGRLMK- |
10 | 4tq3A | 0.09 | 0.08 | 3.19 | 1.02 | PROSPECTOR2 | | AWLCFLLPYAVGFGFGITPNASLQHAVLGLLSFAFWMAFSFTIVTGEISVREAWLYCIAFLALFFLAMLGANIIGYVYSAPPRWPVMDVICNALAAVLAFYAGLSIGGAE--------------------VPIAIYPAAFFLAATFYIPITVILWAYVFLMAERIEIKVISPLIIAYTLIYTFIINSRWDGEKLNVSPNLILTPFGIISALFIAYGFAVISV-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|