Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | PIPAGTVLIGHLNTDHDFCTRRKPTEMDLIITSVTRSKYFQSRLQVKANLDLKYTAEGAEQEDVLPVEGYYNFGTHQLVILPPENDRLGLVCSFRAGNDNRCSAAIVHEASLAHCGDDFVFVR |
1 | 2gtlN | 0.31 | 0.31 | 9.33 | 2.01 | SPARKS-K | | VVKAGNVFSGTSTWH--GCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRRLILLPTDDDHLAVVCSFNRGDNERAECHRVTEATLHQCADLFVTLE |
2 | 2gtlO | 0.36 | 0.35 | 10.41 | 1.92 | FFAS-3D | | PTKAGDKFIGDVCFD--HCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPEEDGLGLVGEFDGYNFDRFVGHIVHELSEEVCAE-FIFHR |
3 | 2gtlO | 0.33 | 0.33 | 9.76 | 4.21 | HHpred | | PTKAGDKFIGDV--CFDHCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPEEDGLGLVGEFDGYNFDRFVGHIVHELSEEVCAEFIFHRK |
4 | 2gtlN | 0.31 | 0.31 | 9.33 | 1.59 | MUSTER | | VVKAGNVFSGTSTWH--GCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRRLILLPTDDDHLAVVCSFNRGDNERAECHRVTEATLHQCADLFVTLE |
5 | 4u8uN | 0.27 | 0.27 | 8.23 | 2.45 | CNFpred | | PVKPGNIFSGTSH--WHDCLLRSDHVTRVVIKGTIRRNYFKSRIWVRAQIESDLIHDGKKELSDFDSKGYYNFANRRLVLIPIAQKHLSVICDFDRGDSRRASCHRVLEGTLHQCANLSVHLQ |
6 | 2gtlN | 0.31 | 0.31 | 9.33 | 3.32 | HHsearch-2 | | VVKAGNVFSGTS--TWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRRLILLPTDDDHLAVVCSFNRGDNERAECHRVTEATLHQCADLFVTLE |
7 | 2gtlN | 0.31 | 0.31 | 9.33 | 2.48 | Neff-PPAS | | VVKAGNVFSGTSTWH--GCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRRLILLPTDDDHLAVVCSFNRGDNERAECHRVTEATLHQCADLFVTLE |
8 | 2gtlN | 0.32 | 0.31 | 9.32 | 5.38 | HHsearch | | VVKAGNVFSGTS--TWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRRLILLPTDDDHLAVVCSFNRGDNERAECHRVTEATLHQCADLFVTL- |
9 | 4u8uM | 0.26 | 0.25 | 7.78 | 1.18 | PROSPECTOR2 | | TYDIGSSFAGVV--SWQACEEATPHHAVVTITANERKEFFKPRIWVRAILAFEEEEHEHH-IKTFQLRGYYSFGDRTLALGPERKPVYGVRCHFDRGDDDHADCQIVNPASLFVCGNFAAERH |
10 | 4u8uM | 0.27 | 0.26 | 7.99 | 1.41 | SAM | | PADIGSSFAGVV--SWQACEEATPHHAVVTITANERKEFFKPRIWVRAILAFEEEEHEHH-IKTFQLRGYYSFGDRTLALGPERKPVYGVRCHFDRGDDDHADCQIVNPASLFVCGNFAAER- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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