Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | PPQKPQLKLARVQSQNGIVLSWSVMEVDRSCATVDSYHLYAYHEDPSATMPSQWKKIGEVKALPLPMACTLTQFVSGSKYYFAVRAKDIYGRFGPFCDPQS |
1 | 5e52A1 | 0.16 | 0.15 | 4.94 | 1.46 | SPARKS-K | | -PGPPG-IVIVEEIESTATLSWSPAADNH--SPISSYNLQARSPFSLGWQTVKTVPE---IITGDMESAMAVDLNPWVEYEFRVVATNPTGDPSTPSRMIR |
2 | 5e4sA1 | 0.17 | 0.16 | 5.22 | 1.78 | FFAS-3D | | PPGPPEAVTIDEITDTTAQLSWRPGPDNHS--PITMYVIQARTPFSVGWQA---VNTVPDLVDGKTFTATVVGLNPWVEYEFRTVAANVIG-IGEPSRPSE |
3 | 5z06A2 | 0.15 | 0.13 | 4.33 | 1.29 | HHpred | | SALNAPVLQEAKAYERHIDIKWIPE-------DIKYYRIYRSF-DG-----ITYQPVAVRRPWMN--RYTDFLGEVGKKAYYKVTAVDYALNESNDSQTVS |
4 | 1va9A | 0.19 | 0.18 | 5.77 | 1.38 | MUSTER | | PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQY---SIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG-TGPSSSEIN |
5 | 4n5uA | 0.17 | 0.16 | 5.22 | 1.25 | CNFpred | | TPSAPPQKVMCSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDG---EDRGRHVVDGISR--EHSSWDLVGLEKWTEYRVWVRAHTDV-GPGPESSPVL |
6 | 5i99A | 0.15 | 0.14 | 4.68 | 0.45 | HHsearch-2 | | APEIAPSEVSGGGSRSELVITWDPVPEELQNGGGFGYVVAFRPLGV-----TTWIQTVVTSPDNPRYVFRNESIVPFSPYEVKVGVYNNKG-EGPFSPVTT |
7 | 6gvkA2 | 0.18 | 0.17 | 5.47 | 1.70 | Neff-PPAS | | TPSAPGPLVFTALSPDSLQLSWERPRRPNG--DIVGYLVTCEMAQGGG-----PATAFRVDGDSPESRLTVPGLSENVPYKFKVQARTTEG-FGPEREGII |
8 | 5z06A2 | 0.13 | 0.11 | 3.78 | 0.63 | HHsearch | | SALNAPVLQEAKAYERHIDIKWIPE-------DIKYYRIYRSFDG------ITYQPVAVRRPWMN--RYTDFLGEVGKKAYYKVTAVDYALNESNDSQTV- |
9 | 5e52A1 | 0.17 | 0.16 | 5.20 | 0.96 | PROSPECTOR2 | | PGPPGIVIVEEI-TESTATLSWSPA--ADNHSPISSYNLQARSPFSLG-----WQTVKTVPEIGDMESAMAVDLNPWVEYEFRVVATNPTGDPSTPSRMIN |
10 | 5z06A2 | 0.15 | 0.13 | 4.32 | 0.88 | SAM | | -ALNAPVLQEAKAYERHIDIKWIPE-------DIKYYRIYRSF-DG-----ITYQPVAVRRPWMN--RYTDFLGEVGKKAYYKVTAVDYALNESNDSQTVS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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