>PF16769 (715 residues) AFPAAPCCVDVSDRLRALAPSAECPIAEENLARGLLDLGHAGRLGISCTRLRRLRNKTAH QMKVQHFYQQLLSDVAWASLDLPSLVAEHLPGRQEHVFWKLVLVLPDGEEQSPESCGRIL ANWLKVKFMGDEGSVDDTSSDAGGIQTLSLFNSLSSKGDQMISVNVCIKVAHGALSDGAI DAVETQKDLLGASGLMLLLPPKMKSEDMAEEDVYWLSALLQLKQLLQAKPFQPALPLVVL VPSPGGDAVEKEVEDGLMLQDLVSAKLISDYTVTEIPDSINDLQGSTKVLQAVQWLVSHC PHSLDLCCQTLIQYVEDGIGHEFSGRFFHDRRERRLGGLASQEPGAIIELFNSVLQFLAS VVSSEQLCDLSWPVTEFAEAGGSRLLPHLHWNAPEHLAWLKQAVLGFQLPQMDLPPQGAP WLPVCSMVVQYASQIPSSRQTQPVLQSQVENLLHRTYCRWKSKSPSPVHGAGPSVMEIPW DDLIALCINHKLRDWTPPRLPVTSEALSEDGQICVYFFKNHLKKYDVPLSWEQARLQTQK ELQLREGRLGIKPFHPSANNFPIPLLHMHRNWKRSTEYGREGRIPSTEDLMRGASAEELL AQCLSSSLLLEKEENNRFEDQLQQWLSEDSEAFTDLTSLPLYLPQTLVSLSHTIEPVMKT SVTTSPQSDMMREQLQLSEATGTCLGERLKHLERLIRSSREEEVASELHLSALLD |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 660 680 700 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | AFPAAPCCVDVSDRLRALAPSAECPIAEENLARGLLDLGHAGRLGISCTRLRRLRNKTAHQMKVQHFYQQLLSDVAWASLDLPSLVAEHLPGRQEHVFWKLVLVLPDGEEQSPESCGRILANWLKVKFMGDEGSVDDTSSDAGGIQTLSLFNSLSSKGDQMISVNVCIKVAHGALSDGAIDAVETQKDLLGASGLMLLLPPKMKSEDMAEEDVYWLSALLQLKQLLQAKPFQPALPLVVLVPSPGGDAVEKEVEDGLMLQDLVSAKLISDYTVTEIPDSINDLQGSTKVLQAVQWLVSHCPHSLDLCCQTLIQYVEDGIGHEFSGRFFHDRRERRLGGLASQEPGAIIELFNSVLQFLASVVSSEQLCDLSWPVTEFAEAGGSRLLPHLHWNAPEHLAWLKQAVLGFQLPQMDLPPQGAPWLPVCSMVVQYASQIPSSRQTQPVLQSQVENLLHRTYCRWKSKSPSPVHGAGPSVMEIPWDDLIALCINHKLRDWTPPRLPVTSEALSEDGQICVYFFKNHLKKYDVPLSWEQARLQTQKELQLREGRLGIKPFHPSANNFPIPLLHMHRNWKRSTEYGREGRIPSTEDLMRGASAEELLAQCLSSSLLLEKEENNRFEDQLQQWLSEDSEAFTDLTSLPLYLPQTLVSLSHTIEPVMKTSVTTSPQSDMMREQLQLSEATGTCLGERLKHLERLIRSSREEEVASELHLSALLD | |||||||||||||||||||
1 | 5a9q4 | 0.11 | 0.09 | 3.13 | 1.48 | FFAS-3D | -----------SDFLQSF---------LKHSSSTVFDL---------VEEYENICGSQVNILSTASMLWLLQQEMTWR--LLASLYRDRIQSAEEE---------SVVTAVNASEKTQLVVDWLESIAKDEIGIEYAKSVY-----------------------------WENTLHTPLVTELDPDAPIRQKMPL------------DDLDREDEVRLLKYLFTLIRA----------------GMTEEAQRLCKRCGRAATLEGWKLYHDPNVNGLEPVEGNPYRRIWKISCWRMAEDEL------FNRYERAIYAALSGNL----------KQLLPVCDTWEDTVWAYFRVMVDSLVE----QEIQTSVATLDETEELPRLGANWTLEKDLEENQEHYHIVQKFLILGDLSRNNLPGHLLRFMTHLILFFRTLGLQTKSIEVLKTYIQLLIREKHTNLIAFCHLPQDLAVEDRLKIDRAEALKQGNAIMRKFLASKKHEAAKEVFVKIPQ-------DSIAEIYLPAEDDNAIREHLCIRAYLEAH--------------ETFNEWFKHMNSVPQKPALIPQPTFTEKVAHEHKEKKYEMDFGIWKGHLDALTADVKEKMYNVLKEDHERTHQMVLLRLCLPMLCFLLHTIL--------HSTGQYQECLQLADMVSSERHKLYLVFEELRKLLQKLRESSLML---LDQGLD | |||||||||||||
2 | 2pffB | 0.15 | 0.10 | 3.44 | 1.22 | HHsearch-2 | ---------------------------MDAYSTRPLTLSHGSLEH--V----L-----------------------LVPTASFFIA-SQLQEQFNKI-------LPEPTEGFPTTPAELVGKFLGYVSSLVEPSK---------------------VGQFDQVLNLCLTEFENCYLGNDI------HALA---AKLLQEN-----------DTTLVKTKELIKNYIMAKRFDKKSNSALF----------RAVG---------EGNAQLVA-IFGGQGNTD--DYFEELRDLYQ----TYHVLIKFSAETLSELIRTTLDAEK--VFTQGLNILEWLENPSSIPISCPLIG---VIQLAHYVVTAKLLG--FTPGELRSYKGATGHSQ----------GLVTAVAIAETDSWESFF--VSITVLFFIGVRCYEAYPNTSLPPS--------ILEDSL-ENNEG----VPSPMLSISNLTQEQVQDYV-NK-TNSHLPAGKQVEISLVNGAKNLVV---------SGPPQSLYGLNLTLRKA--------KAP---SGLDQSRIPFSERKLKFS-----NRFLPVPFHSHLLVPAS------DLINK--------------DLVKN--NVSFNAKD-IQIPVYDTFDLLSISEIVDCIIRLPVKWETTTQFKATHILDFGPGLGVLTHRNKDGT-----------GVRVIVAGTLD | |||||||||||||
3 | 5mqfM | 0.09 | 0.08 | 3.02 | 1.92 | Neff-PPAS | --------VKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFPRLWLDYCQFLMDQGRRTFDRALRALPIT---QHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQN----------PDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTV-------------------RDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPF--KATGKPHTLWVAFAKFYEDNGQLDKATKVNFKQVDDLASVWCQCGELELRHEN-----YDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLAD-------------LEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYESLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQ------QYDMFNIYIKRAAEIYGVTHTEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICRTTGAFWQTWKDFEVR | |||||||||||||
4 | 2j68A | 0.11 | 0.08 | 2.95 | 1.29 | PROSPECTOR2 | VNQ-----VATDRFIQDL------------------------------ERVAQVRSEMSVCLNINKAELAGDSSSGKLSLEDIEDITIASKNLQQGVFRKVTIHFNDGKSPQQLDFQN-----FKYKYTIDPAEAKKLEQEKK--------------QAFPDVDYAVVEYLQKGLNDTEARNELSLGYVNNCHAILFVMRASQPCT-------------LGERRYLENYIKGRGLTVFFLVIDPDDVEELQASENRLRNANLAEYCTVEGQNVFELQADLDGTGAIAELRQVRTLARLA--------CNHTREAVARRIPEPEFNKLTGIRDQKEIINTRDTQARTISESFRSYVLNLGNTF-ENDFLRYQPELNLFDFLSSGKREAFNAALQKAFEQYITDKSAAW-------------TLTAEKDINAAFKEL---SRSASQYGASYNQITDQITEKLTGKDVEDNSP------------------GWAKWAMGLLSLSKGNLAGFALAGAGFDWKNILLNYFTVIGIGGIITAVTGILLGPIGFALLGLGVGFLQADQARRELVKT--------------------------AKKELVKHLPQVAHEQDSYEREVSKRINDDIVS--------------------------------------RKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAEAAYSNLLAYYSHH | |||||||||||||
5 | 4m0mA | 0.11 | 0.09 | 3.20 | 0.83 | SPARKS-K | REKVHHILTSFHNTISEVNKDNP-TVAR---FDGPSKDPIPGTYIYNPKDNSKILISPVISQTITNAIQKLTGNLAGEGIELNDIIEKN--GGKLPETVNLHGFS---------RGADTCRANLLYQLYPD------------IKVNLFLIDPGPGKRDDPHSYTVFESTLLHEYRPGFDPQHSGRADPEKTKVVVKPYYGEHNRVTEDPNTNHTAILLNDDNRFCRETGSLPSPPIIARVVRTHSELSPEKRFELLCGWGYAKL-----------TKKYHERSILSKR-------EDYVQDSRLFVNQEHRELFKQLY-PKSFNWFFEVIVELKSLSED--------PRYEHFFSSLAKHFINENNIAGTLPEPSGIDRDEKS--SFGQPPVRDRLSYLQHSLTSIC----DEKSS--TNESVKNLLLERVKESRT--KPDSEAIKHLEQT-DEVRQILESK-------NEKGF------------LWQQINHISPN--------------------------------ARQYCEQVKAALREHLEHN----------QVLSDTQKEEIRKADRDNIVNDSSKDSQQKYREIRREVIELNAKATDNQLTRSHFQKAYLESLSQTLNQLSKAHYGETSTDKITQRLVLNFFNIPLPKLHSEVKEQIADKLKERLVDLKEKGGNDITRELGKAREDLIEHYELDKIINKSEELLVA | |||||||||||||
6 | 4aurA | 0.09 | 0.07 | 2.47 | 1.44 | FFAS-3D | ----------------------------------------------QFKQFSIEKQAAINS--LLQLRGLELGEGINISDDLQKVAINAIESDV----LRIALL---------GAFSDGKTSVIAAWLGKVDDNISDESSDR-----LSIYKPEGLPDQ------CEIVDTPGLFDGRLVYEDLTRRYISEAHLIFYVVDATNPLKE---------SHSDIVKWVLRDLNK--LSSTIFVINKDEVANLKGKLQRAADLTAQECEQL----NIVCVASNPNGRGLTYWFTKPEHYESRSR-------INDLKNAATEILKTNVPEVLLVKTGDVVK-----DIVIQRVTLASRHLDELNTFV--EKNDEDHRFSNDI----------------KQSRIEVKRLAGELPFDDELGYTEDGVGFKLHLRIKQSVDRF------FEQSTAVSQRLSDDITRQLSS-------------------------SESFLSGLGEGAFRSLGGAFKGVSKI----------------SPATLKTTILAARDTIGKLTGYVYKFKPWEATKLAGSIA------KWAGPVGAAFTIGSDLWDAYKAHER-----EQELKEVKASAKIIKEPFEDIYDV-----------------------------LSSDEKFAFFAPQIQ------------QEQVVTELAEKSQAIRDNQKLSLIQLAQLVP | |||||||||||||
7 | 1vt4I | 0.16 | 0.11 | 3.77 | 0.34 | HHpred | --------------------------------------------------------TGEH----QYQYKDILKDVQDMPKSILSKIDHIIMSKTLRLFWTLL----SKQEE---MVQKFVEEVLRIKFLMSPIKT---EQRQPSMMTR-MYI-----EQRD------------RLYND-------NQ--------VFAKYN---------VSRLQPYLKLR-QALLELRPAK-----NVLIDGVLG-SGKTWVALDVCLSYKVQCKM--DFKIFWLNLKNNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNQVTDFLSAATTTH----IS-------LDHHSMT------LTPDEVKSLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWCDKLTTIIESSLNVLEPEYRKMFDRL-----SVFPPSAHIPSDVMVVVNKLHKYSLV--EKQPK-------------------ESTISIPSIYLELKVKLENEY--ALHRSIPKTFDSDDLIPP--YLD-QYFYSHIGHH--LKNIEHPER----------------MTLFRMVFLDFRFLEQKIRHDS---TAWNASGS-ILNTLQQKFYKPYICDND---P-KYERLVNAILDFLPKI--EENLICSKYTDLLRIALMAEIFEEAHKQQ------ | |||||||||||||
8 | 5ifeC | 0.10 | 0.10 | 3.53 | 0.97 | MUSTER | DK--AR-EFGAGPLFNQILPLLMSPTLEDQERHLLVKVKLDDLVRPYVHKILVVIEPLLIDYYARVEGREIISNLAAAGLTMISTMRPDIDNMDEYVRNTTARAFAVASALGIPSLLPFLKAVCK--------SKKSWQARHTGIKIVQQI-AILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAA--LAEAATPYGI--------ESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTRMLILIRE-------------QSPDEEMKKIVLKVVKQCCGTDGVEANY---IKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVG-AAEIISRIVDDLKDEQYRKMVMETEKIMGNLGAADID------HKLEEQLIDGILYA-FQEQTTEDSGKRVKPYLPQICGTVLWRLNNKSAK--VRQQAADLISRTAVVMKTCQEEKLGHLGVVLYYPEVLGSILGALKAIVNVIGMHKMTPPIKDLNRHEKVQVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRAGPHDVLATLQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVLNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED----MDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNY-----WPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFH | |||||||||||||
9 | 5fdnA | 0.13 | 0.08 | 2.80 | 0.97 | CNFpred | -------------SLLDFL------RQVSTFGLSLVRLD----IRQESERHTDVLDAITKH-SEEGRQEWLLAEL-SDVLDTFKVISELP----SDCFGAYIISMAT-------SPSDVLAVELLQRECHV-----------NPLRVVPLFEKL-------ADLEAAPAAVAR-----LFSIDWYKNRINGKQEVMIGYSDSGKDAGRLSAAWELYKAQEELVKVAKKY----GVKLTMFHGR-GGTVGRGGGPTHLAILSQPPDTVNGSLRVTVQ---------GEVIEQSFG----------------EAHLCFRTLQRFTAATLEHGMNPPISPKPE--WRALLDEMAVVATEEYRSVVFFVEYFRLATPELEYGRM---GGIESL-----RAIPWIFAWTQTFHLPV---------WLGFGAAFRYAIKKD-------VRNLHMLQDMYKQ----------------------WPFFRVTIDLIEMVFAK------------------------------------GDPGIAALYDKLLVSE--------------------------------------------------LWAFGEKLRANFDE-------TKNLVLQTAGH----------------KDLLE-------------------------------GDPYLKQRLRLRDSYIT---TLNVCQAYTLKRIRD | |||||||||||||
10 | 1vt4I | 0.14 | 0.11 | 3.65 | 1.02 | HHsearch-2 | -------------------------------------------MDF-ETGEHQYQKDILEDAFVDNFD---CKDVQDMPKSILSKIDHIIMSKTLRLFWTLL----SKQEE---MVQKFVEEVLRINFLMSPIKTE---QRQPSMMT--------------------------RM-YI------EQRDRLYNDNQVFAKYNVS------RLQPY---LKLR-QALLELRPA-----KNVLIDGVLGGKTWVALDVC--LSYKVQCK--MDFKIFWLNLKNNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNQVTDFLSAATTTHISLDHHSM----------------TLTPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNKLTTIIESSLNVLEKMFDRLSVF---PPSAHIPTLLSLIWFDVIKSVVVNKLHKYSVEKQP-------------------KESTISIPSIYLELKVKLERSIVDHYNIPK--TFDSDDLIPP--YLD-QYFYSHIGHH--LKNIEHPER----------------MTLFRMVFLDFRFLEQKIRHD---STAWNASGSI-LNTQQLKFYKPYICDND---P-KYERLVNAILDFLP--KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |