Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | VLPAGTLVKFGKPGDSVEQMKPLINCKALGATGLTGSFVDCTTLMDTNKQFISDMPEGPEKSLGFIDDPENSDFVSFLNAAEKRDTVQFYIALPNKRTATMVLALSGWEMNDINAPASEVIQITVKGKQNNLVWGIA |
1 | 2k4qA | 0.22 | 0.21 | 6.69 | 1.33 | SPARKS-K | | VKGAGTTLWVYKGSGDPYDWSRLAKVKDLTPGELTAESYDDSYLDDEDAATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSI---GKAVTAKEVITRTVKVTNVGRPSMAE |
2 | 2k4qA | 0.23 | 0.22 | 6.85 | 1.68 | FFAS-3D | | VKGAGTTLWVYKNPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIG---KAVTAKEVITRTVKVTNVG------ |
3 | 2k4qA | 0.22 | 0.21 | 6.69 | 2.21 | HHpred | | VKGAGTTLWVYKGSGDDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKA---VTAKEVITRTVKVTNVGPSMAE- |
4 | 2k4qA | 0.22 | 0.21 | 6.69 | 1.87 | MUSTER | | VKGAGTTLWVYKGSGDPYDWSRLAKVKDLTPGELTAESYDDSYLDDEWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSI---GKAVTAKEVITRTVKVTNVRPSMAE- |
5 | 2k4qA | 0.23 | 0.21 | 6.63 | 1.55 | CNFpred | | VKGAGTTLWVYKG-LSDVDWSRLAKVKDLTPGELTAESYDDSYLDADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIG---KAVTAKEVITRTVKVTN-------- |
6 | 2k4qA | 0.22 | 0.21 | 6.69 | 3.75 | HHsearch-2 | | VKGAGTTLWVYKGSGDDVDWSRLAKVKDLTPGELTAESYDDSYLDDDWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKA---VTAKEVITRTVKVTNVRPSMAE- |
7 | 2k4qA | 0.23 | 0.22 | 6.85 | 2.07 | Neff-PPAS | | VKGAGTTLWVYKGSGSDVDWSRLAKVKDLTPGELTAESYDDSYLDDDWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIG---KAVTAKEVITRTVKVTNVG-----R |
8 | 2k4qA | 0.22 | 0.21 | 6.69 | 5.06 | HHsearch | | VKGAGTTLWVYKGSGDDVDWSRLAKVKDLTPGELTAESYDDSYLDDDWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKA---VTAKEVITRTVKVTNVRPSMAE- |
9 | 2k4qA | 0.22 | 0.22 | 6.89 | 1.20 | PROSPECTOR2 | | VKGAGTTLWVYKGSGSDVDWSRLAKVKDLTPGELTAESYDDSYLDDDWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKA---VTAKEVITRTVKVTNVGRPSMAE |
10 | 2k4qA | 0.22 | 0.20 | 6.45 | 1.34 | SAM | | -KGAGTTLWVYKGSGDDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKA---VTAKEVITRTVKVTNVG------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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