Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | VLEIEGVTSFNPGGNPADQIEDPCLSDTSRKYKKGLRTPGQATLGINADPRLASHVRLFQLSEKDGETSVKWAIGWSDGIDVKPTVSTEGDDFVLPPARTWFTFEGYVSDFPFDFASNTLVATQATIQRSGAGKWTP |
1 | 2k4qA | 0.16 | 0.13 | 4.39 | 1.13 | SPARKS-K | | WSRLAKVKDLTPGELTAESYDDSYLDDEDAATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTR--AYKIRFPNGT--------------------VDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE |
2 | 2k4qA | 0.16 | 0.13 | 4.39 | 1.64 | FFAS-3D | | WSRLAKVKDLTPGELTAESYDDSYLDDEDTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDT--RAYKIRFPNGT--------------------VDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE |
3 | 2k4qA | 0.17 | 0.14 | 4.58 | 1.98 | HHpred | | WSRLAKVKDLTPGELTAESYDDSYLDDEDTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEG---------------------DTRAYKIRFPNG-TVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE |
4 | 2k4qA | 0.16 | 0.13 | 4.39 | 1.44 | MUSTER | | WSRLAKVKDLTPGELTAESYDDSYLDDEWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGD--TRAYKIRFPNGT--------------------VDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE |
5 | 2k4qA | 0.15 | 0.12 | 4.19 | 1.59 | CNFpred | | WSRLAKVKDLTPGELTAESYDDSYLDADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNE--GDTRAYKIRFP--------------------NGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE |
6 | 2k4qA | 0.17 | 0.14 | 4.58 | 3.50 | HHsearch-2 | | WSRLAKVKDLTPGELTAESYDDSYLDDEWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEG---------------------DTRAYKIRFPNG-TVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE |
7 | 2k4qA | 0.17 | 0.14 | 4.58 | 1.87 | Neff-PPAS | | WSRLAKVKDLTPGELTAESYDDSYLDDDWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDT--RAYKIRFPNG--------------------TVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE |
8 | 2k4qA | 0.17 | 0.14 | 4.58 | 4.73 | HHsearch | | WSRLAKVKDLTPGELTAESYDDSYLDDEWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEG---------------------DTRAYKIRFPNG-TVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMA- |
9 | 2k4qA | 0.17 | 0.14 | 4.58 | 1.09 | PROSPECTOR2 | | WSRLAKVKDLTPGELTAESYDDSYLDDEWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYK---------------------IRFPNG-TVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAE |
10 | 2k4qA | 0.17 | 0.14 | 4.56 | 1.31 | SAM | | WSRLAKVKDLTPGELTAESYDDSYLDDEWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEG---------------------DTRAYKIRFPNG-TVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPS--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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