>PF16445 (433 residues) EENIMEQFSDEDNVTVRLNLSTRSVEAGESDMLDEYSSDPANWYKTGTLFPKPPALPRIA LMIFNKDLNRYVYNSLISFNPDGTSGRYQIKVRIPKGETEFYAFYAPNQTGQDLPYYTPE GDFRNKIPWDFLKMDIEEINREAIVGAAFPAILKEQENGSIGLPSNSPYDGVDPSPANEK IIDWTETVAKPWEDVPGMSNRLHMGMLSGKAEATVQPSTGEQVQEVTVPLFRDFSRIRIY IASAAAHDRINYIYKRIAFLNFPVMMSPSFRENDSDESQLAASSPSTENIMEHTGVYSYG IKNGGAMSIYEAPFTTDGKIDHTQMETRKYEQFFLPQYLAPYIPESNTWQKGYPHPKIQL TVEHSDGGNNSQLKTKTFLFDVGEETSPGVYSGPIYPNRDYKVFIVLPESSDKEIIYRVE PWVRKNVDFPPFQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | EENIMEQFSDEDNVTVRLNLSTRSVEAGESDMLDEYSSDPANWYKTGTLFPKPPALPRIALMIFNKDLNRYVYNSLISFNPDGTSGRYQIKVRIPKGETEFYAFYAPNQTGQDLPYYTPEGDFRNKIPWDFLKMDIEEINREAIVGAAFPAILKEQENGSIGLPSNSPYDGVDPSPANEKIIDWTETVAKPWEDVPGMSNRLHMGMLSGKAEATVQPSTGEQVQEVTVPLFRDFSRIRIYIASAAAHDRINYIYKRIAFLNFPVMMSPSFRENDSDESQLAASSPSTENIMEHTGVYSYGIKNGGAMSIYEAPFTTDGKIDHTQMETRKYEQFFLPQYLAPYIPESNTWQKGYPHPKIQLTVEHSDGGNNSQLKTKTFLFDVGEETSPGVYSGPIYPNRDYKVFIVLPESSDKEIIYRVEPWVRKNVDFPPFQ | |||||||||||||||||||
1 | 3up6A | 0.11 | 0.08 | 2.90 | 1.13 | CNFpred | ------------RAQLSIDLVNN--------------------------VEQQEKINSMRFIVFGSTGVRLDVNEHILLSTPETIDAQLLEVTSS-NDILVVVIANE----------------------------------PQSLTSQLDGIANLLTLQEMIYDISSILNSDGQIISATGM--------------------PMTGVIR---DISIAP---DETKTVQMVIERAVARVDVFIEAIDGGAVTGYTSTSVTLHNFSHDSYFVMGNVGNGTRDNADS-------SKNYGKVKEDVS-ESNLLTHSWTAATTETWAYSSAPGAENRKLLCSFYTAERL-----FKSDY-SDRLSISMANVLKGSDVTGITGKVIESVTKVSPTAQPFTEIRRNNVYQVTARVGKIGIQILTISVEDW----------- | |||||||||||||
2 | 3cm9S1 | 0.07 | 0.07 | 2.72 | 1.06 | Neff-PPAS | --EEVNSVEGN---SVSITCYYPPTSVNRHTRK--------YWCRQGA-------RGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSRYKCGLGINSRG----LSFDVSLEVSQGPGLL-----NDTKVYTVDLGRTVTINCPFKTENAQKRIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRG----SVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRD------A | |||||||||||||
3 | 4gpvA | 0.12 | 0.09 | 3.00 | 1.07 | SP3 | -----GNNVPGEQAVLTIKLKGDGD-----------PATDTEDAVINN----------YLVFLFREG-GALDCAPYEGSSNA-----AATITTGTTAAKKAYVVATGALAGGLFATVK---------------------TETDLLAVTGS------------LDNTDNASTQTKT-----------------------------NLWSGESEVKF---NGGTNAQVTVSLSFVAAKIQLIVKDNNTGGTITITDDAAVLLFAGGRFFGSAAEKVTQNEFYTGFNQYTGAFDSGVTTSTA-----LSDAVSPGDFTINAGSTVFN-------HF--------YTFGNDG---TTQPTILAIKSTKTVGGT---SSPIFYPILFTNTDAR----HTIEPGKSYTVTVTLNVSSSIEVTVTAAQWVTQPVD----- | |||||||||||||
4 | 1crua | 0.07 | 0.06 | 2.54 | 1.24 | PROSPECTOR2 | DVPLPSQFAKAKSENFDKKVILSNLNKATGKRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNYISGTFKNPKSKELPNQRRYTYNKSTDTLEKPVDLLAGLPSSKDHQIGPDQKIQGRNQLAYLFLP----------------------NQAQHTPTQQELNGKDYHTYMGKVLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-----LLQSEQGPNSDDEINLIVKGGNYGWPNVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTL--YTVQDTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWENTLLVPFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASP----DGNVLYVLT---DTAGNVQKDDGSVTNTLENPGST | |||||||||||||
5 | 4m8rA | 0.15 | 0.12 | 4.05 | 0.71 | SPARKS-K | VTEANQTVKPGDIVHI----YGDGFQEGDQVDFDPEGYLGPVGAENGSIRPYRKPESRVEIFLNRA--------------SERSLG----KVLLADGQTPDFRLYGINETDKTIERAYAEE----------------------------------------TVTGKKTWD--SAHPDFRSVVNLQKTYGLGLAEENGVQQPFFLDFCTGEWKALS----FYDYNTLALVIGSGND-----IAAIQQRGKGYSLYNVSAGLE-QSNYATKTRSNFPPEPQF--ELPE-GFTPEQFGDYPGVFQGNEIILL--SARKGNGKWVPLYNYRNGFYVLIEADAIIPFYFGALPDSL-----LYQKKVGYIYYSSGDNRGSSFRLLEPDKESSKLQLQEPFAQLSDKKVVSITNRLDRIGTITVLFSWNSKEWDLSPYN | |||||||||||||
6 | 4jg5A | 0.14 | 0.10 | 3.33 | 0.54 | FFAS-3D | --------LEGAKLSVAVKASGTATKAYNPNDVNELEGE--------------AYINNLAVVVFNETGTELLGYKWEALSGAEHSAIIADVPTTKAVRARIIVLA--N---------VPRDLLSTVSTYDEFQTRLVDLSSQS----------------QTNLTSSQVIVTKSALSEEDNYLGYTDLGDQNVDGISD-----------------------------PILLTRVAARIDLVNISTTPFAGREVRIDAVGIYNKT--KSYYFSEADWGETEAPDAVRNSEDTSFEDLLVNDGTSISNTPFVHYVENKSDD-----------------------------------HTIAVKATL---RGNSSYQDHTKIFTAVINAGLQNGYDHNFIRRNYVYRLRIYFEVDTNLNIAVQVVGWGPVQ------- | |||||||||||||
7 | 4jg5A | 0.15 | 0.10 | 3.51 | 0.53 | HHpred | --------LEGAKLSVAVKASATKAY------------NPN----DVNELEGEAYINNLAVVVFNETGTELLGYKW-EA-LSGAEHSAIIAVPTKAVRARIIVLA--NVPRDLL----------ST-----------VSTYDEFQTRLVD--LSSQ--SQTNLTSSQVIVTSALS--------------------EE-DNY--LGYTDL-------GDQNVDGISDPILLTRVAARIDLVISTRTPFAGREVRIDAVGIYN-KTKSYY-FSEADWGE-------------TEAPDAVRNSE--D-------TSFE---DLLVNDGTSI------SNTPFVHYVE--N--K-SDDHT-IAVKATLRGNSS-YQDHTKIFTAVINAGGLQNYDHNFIRRNYVYRLRIYFDSFDNLNIAVQVVGWGPVQH------ | |||||||||||||
8 | 5xxzA | 0.14 | 0.12 | 4.29 | 0.70 | MUSTER | LGDHLPQTLGKTPIKLKLTDGNYQTKETLKDNLET-QSDTGLVTNQAQLAVVHRNQPQSQLTK-NQDFF-------ISPNEDG-NKDFVAFKGLENNVYLTVNVYAKDDHQKQTPIWSSQAGAGAS-AIESTAWYGITARGSKVPGDYQYVVTYRDEHGKEHVNDKKPITQGRFDTINGVDHFTPDKTKALGSSGIVREEVFYLAKKNGRKFDVTEGKDGITVSDNKVYIPKNPGSYTISKRDGVTLSDYYYLVEDRANVSFATLRDLKAVGKDKAVVNFGLDLPVPEDKQ--IVNFTYLVRDANSGNSLILPY---GKVELLTYDTN-AAKLESDKIVSFTLSADNNFQQ-KTLATSQITAHF---DHLLPEGSRVSLKTQGQPLEQSLYVPKAYQEGTYEVVVSLPPNEVHELSLRLVK------------ | |||||||||||||
9 | 5nf4A | 0.14 | 0.09 | 3.06 | 1.03 | CNFpred | ------------DVYLLVNARAA---------------------------DFEDRVHSLAMLVFDSNTGEKVAEHFSSSIG-SGTSTYVFTVKLKPGQRDFFFVANI----------------------PNMQTAMASIVNKSDMNHFMQVFR--------DLDPIH---------------------------YHNATNNNGFPMSRMYSNQTVTIGGPLPFKENNVKLQRVVAKLDVNIVEG------VENLQKIELCNANVHYRLVPNQSEPIQFYG--------------PVELRRVGATNQWLGYMPEA---------------------------IVESTKWWGNTGNKPINFFRLTTRG------GLVYDVPIITHEGAIPDKPSYTVYRNRHYIYRIKTLP--KIEVKYSICDW----------- | |||||||||||||
10 | 4q98A2 | 0.17 | 0.07 | 2.35 | 0.62 | HHsearch-2 | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSLTAENQNAKNLIRVHAGISFAVEVNATYQYYSFKPADIAALVAKKD------------SKIFGNSLVSN-----TNAYLYGVQ------TPAGLYTAAG-ETYELEASL-NTN--YAVGAGFYVLES-KYDAELRPTILCIYGKLLDKDGNPLDGTTYYPVLVNYDGNGYQGQNKIVRNNHYKISLNITVQANLNVTCQVTPWVVVNQ------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |