Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | SCMEDEAPSVELNVALDKQVYQVGEPVTFKLNGNPDNIVFYSGEVGHNYAYKERYHADGDLLVKFNSWVRYGDIYHNLKFLVSSDFSGIYDKENVEAATWIDLSDKFRFSVGDDQTPSGEVNLKEYVGAEEDAKLFVAFRYEDEQKARQNNWIIRSITLDCVSAEGVRSNLATMSTMGW |
1 | 4yu5A2 | 0.08 | 0.06 | 2.40 | 1.07 | FFAS-3D | | -------------------------------FGK---HAYYSTRGDDTTLETPFFDLTKNAKFDYKANYELEAECDFVEVHAVTEDGTKTLIDRLGEK-----VVQGDKDTTDGKWIDKSYDLSQFKG----KKVKLQFDYITDPAVTYKGF-ADHVNVTV---DGQVVFSDDAEGQGF |
2 | 4yu5A | 0.08 | 0.07 | 2.61 | 1.21 | CNFpred | | ----------VVRVNLPGKSVETIKPE-----GKHAYYSTRGD-DMHTTLETPFFDLT-NAKFDYKANYELEAECDFVEVHAVTED-----------GTKTLIDRL-DKDTTDGKWIDKSYDLSQFK----GKKVKLQFDYITDPAVTYKGFAMDHVNVTVD--GQVVFSDDAEGQSKM |
3 | 4yu5A2 | 0.08 | 0.06 | 2.39 | 1.68 | HHsearch-2 | | -------------------------ETIKPEFGKHA---YYSTRGDD-HTTLEFFDLTKGNAFDYKANYELEAECDFVEVHAVTE-DG---------TKTLIDRLQGDKTTDGKWI-DKSYDLSQFK--G--KKVKLQFDYITDPAVTYKGFA-DHVNVTVD---GQVVFSDDANLNGF |
4 | 3km5A | 0.14 | 0.12 | 3.98 | 1.21 | Neff-PPAS | | ----ADGDGQGWLCLSSGQ----LDWLTAHGGSNVVSSFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKTGTEETPNGINKGGARFGLSTEANGAKPQSVWIERTVDLP-------AGTKYVAFRHYNC--SDLNYILLDDIQFTMG----------------- |
5 | 4yu5A2 | 0.08 | 0.06 | 2.39 | 2.02 | HHsearch | | -------------------------ETIKPEFGKH---AYYSTRGDD-HTTLEFFDLTKGNAFDYKANYELEAECDFVEVHAVTE-DG---------TKTLIDRLQGDKTTDGKWI-DKSYDLSQFK--G--KKVKLQFDYITDPAVTYKGFA-DHVNVTVD---GQVVFSDDAENNG- |
6 | 3m1hA | 0.15 | 0.09 | 3.02 | 1.02 | FFAS-3D | | -----------------------------------------GPQNPDNYLVTPELSLPGGGTLTFWVCAQDANASEHYAVYASST---GNDASNFANALLEEVPEAIRGTRAQGTWYQKTVQLP-------AGTKYVAFRHFGCTD--FFWINLDDVVITS------------------ |
7 | 3km5A | 0.18 | 0.11 | 3.63 | 1.21 | CNFpred | | ---------------------------------NVVSSFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKT--------GTNAGDFTVVF-GARFGLST-VWIERTVDLP-------AGTKYVAFRHYNCS--DLNYILLDDIQFTMG----------------- |
8 | 3km5A | 0.14 | 0.11 | 3.63 | 1.53 | HHsearch-2 | | FTETESSTPAEWTTIDAD---GDGQGWLCLHGGSVSSFS-WNGMALNPDNYLIDVTG---ATVKYYYAVNDGFPGDHYAVMISKTG-T-------NAGDFTVVFEE-TPNPQSVWI-ERTVDLPA----G---TKYVAFRHYNCS--DLNYILLDDIQFTMG----------------- |
9 | 4yu5A2 | 0.09 | 0.07 | 2.55 | 1.11 | Neff-PPAS | | -------------------------------FGKH---AYYSTRGDHTTLETPFFDLTTNAKFDYKANYELEAECDFVEVHAVTE-----DGTKTLIDRLGEKVVQGDKDTTDGKWIDKSYDLSQFKG----KKVKLQFDYITDPAV-TYKGFADHVNVTVD---GQVVFSDDAEGQSK |
10 | 3km5A | 0.14 | 0.11 | 3.61 | 2.00 | HHsearch | | FTETESSTAPEW------TTIDAGQGWLCLHGGSVSSFS-WNGMALNPDNYLIDVTG---ATVKYYYAVNDGFPGDHYAVMISKTG-T-------NAGDFTVVFEE-TPNPQSVWI-ERTVDLPA----G---TKYVAFRHYNCS--DLNYILLDDIQFTMG----------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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