Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | CGKMNSNYADFVKNGEIVYSGRPDSLTAFSGDNRVLLRWMLVSDPKIVQCKVFWNNKTDSLVIPVTRSAGVDTINAMVNKLPEGLYAFQVFAYDGVGHSSVKSEVTAASYGDTYAQSIFNRSLKGVTKSKDGKTVYLSWFGAGQQAVVVELQYTNSTDQLVTLYLKGLLSERGNPIGFATADTITGYKPGTSFKFRTGFAPTKTAIDTF |
1 | 4ploB | 0.16 | 0.13 | 4.47 | 1.33 | SPARKS-K | | ------------GADESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVGYIIGYGVGSYAETVRVDSKQR----YYSIERLSSSHYVISLKAFNNAG-EGVPLYESATTRSITDVSTPMLPPVGVQAVALTHEAVRVSWADNSVR--LYTVRWRTSSAKYKSEDTT------------SLSYTATGLKPNTMYEFSVMVTKNRRSSTWS |
2 | 4ploB | 0.14 | 0.12 | 4.06 | 1.64 | FFAS-3D | | ------------GADESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNVRGYIIGYGVGSPYAETV---RVDSKQRYYSIERLESSHYVISLKAFNNAG-EGVPLYESATTRSITDVSTPMLPPVGVQAVALTHEAVRVSWADNSVR--LYTVRWRTSSAKYKSEDT------------TSLSYTATGLKPNTMYEFSVMVTKNR------ |
3 | 5u8qA | 0.12 | 0.10 | 3.55 | 1.10 | HHpred | | ---------LYIRTN-ASVPSIPLDVLSASSSSQLIVKWNPPSLGNLSYYIVRWQRQPQDGFESRV----DNKERTVISNLRPTLYRIDIHSCNHEAGCSASNFVFARTMPAEGADDIPGPV--TWEPRP-ENSIFLKWPEPENLILMYEIKYGSQVE-DQRECVSR----------QEGGAKLNRLNPG-NYTARIQATSLSG----- |
4 | 4ploB | 0.15 | 0.13 | 4.33 | 1.46 | MUSTER | | ------------GADESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNVRGYIIGYGVGSPYAETVRVDSKQR---YYSIERLESSHYVISLKAFNNAG-EGVPLYESATTRSITDVSTPMLPPVGVQAVALTHEAVRVSWADNSVR--LYTVRWRTSSAKYKSEDT------------TSLSYTATGLKPNTMYEFSVMVTKNRRS--TW |
5 | 1tdqA | 0.15 | 0.12 | 4.00 | 1.97 | CNFpred | | -----------------TEIDAPKNLRVGSRATSLDLEWDNSEA-EAQEYKVVYSTLEQYHEVLVPKG-IGPTTKTTLTDLVGTEYGVGISAVMN-SKQSIPATMNARTEL---------DSPRDLMVTASETSISLIWTKASGPIDHYRITFTPSSGISSEVTVPR----------DRTSYTLTDLEPGAEYIISITAER-------- |
6 | 4pbxA | 0.18 | 0.16 | 5.29 | 0.51 | HHsearch-2 | | VSAVNSSESVVTRTGEQAPASAPRNVQARMLATTMIVQWEEPVEPLIRGYRVYYTMEPEGNWQKHNVD---DSLLTTVGSLLEETYTVRVLAFTSVGDGPLSDPIQVKTQQGVPGQ------PMNLRAEASETSITLSWSPPRQSIIKYELLFREGDHGEVGRTF-D----------PTTSYVVEDLKPNTEYAFRLAARSPQ-GLGAF |
7 | 4ploB | 0.14 | 0.12 | 4.09 | 1.77 | Neff-PPAS | | ------------GADESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNVRGYIIGYGVGSPYAETVRVDSKQR---YYSIERLSSSHYVISLKAFNNAGEGVP-LYESATTRSITDVSTPMLPPVGVQAVALTHEAVRVSWADNSVR--LYTVRWRTSSAKYKSEDTT------------SLSYTATGLKPNTMYEFSVMVTKNRRSSTWS |
8 | 2geeA | 0.14 | 0.11 | 3.93 | 0.71 | HHsearch | | ------------PRGSHMEVPQPTDLSFVDTDSSIGLRWTPLNSSTIIGYRITVVAAGEGIFEDFVD---SSVGYYTVTGLEPIDYDISVYTVKNGG-ESTPTTLTQQTAVPP---------PTDLRFTNGPDTMRVTWAPPPIDLTNFLVRYSPVKNEVAELSISP----------SDNAVVLTNLLPGTEYVVSVSSVYEQHESTP- |
9 | 4ploB | 0.15 | 0.12 | 4.19 | 1.16 | PROSPECTOR2 | | ------------GADESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNVRGYIIGYGVGSPYAETVRVDSKQR---YYSIERLESSHYVISLKAFNNAG-EGVPLYESATTRSITDVSTPMLPPVGVQAVALTHEAVRVSWADNSVR--LYTVRWRTSSAKYKSEDT------------TSLSYTATGLKPNTMYEFSAHATTYEA----- |
10 | 2geeA | 0.17 | 0.13 | 4.27 | 1.07 | SAM | | -------------RGSHMEVPQPTDLSFVITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFED-FVDSSVGYYTVTGLEPIDYDISVYTVKNGG-ESTPTTLTQQTAVPPPT-------LRFTNIGPD--TMRVTWAPPPIDLTNFLVRYSPVKNEVAELSISP----------SDNAVVLTNLLPGTEYVVSV------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|