>PF16272 (354 residues) LDLTYSGEKLIGKTVSFQTEDSKKGTLTLNDIIPGEKETSFRINLSEQEDNYTFSGETVS GAGATVKYAGSITPKTMKLDLNVTMPQNQWIKTYQMSELTRGRGKDVIRNQTTGEYEWGE SDNQILTAALYTDMDLEMVKEAGSLYATVSVIIKGMGGYLLPQLLKSVTLESDGNITAEY TSDELQLGEQKFSEIDMDNPASQQQVINFIMMKLMFNTLSADDITAATQGRNYADSPRGL AFWYLKNDLLYVKLNLPSIISLAMQGQGQTVDAHLIAGIADAILKSNPFLLKTLLGVVSE SLDNSLLSMIANMDHQSFQMFFSWIKEGIPMQIEKENGHTHIYLNREALSPLIA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LDLTYSGEKLIGKTVSFQTEDSKKGTLTLNDIIPGEKETSFRINLSEQEDNYTFSGETVSGAGATVKYAGSITPKTMKLDLNVTMPQNQWIKTYQMSELTRGRGKDVIRNQTTGEYEWGESDNQILTAALYTDMDLEMVKEAGSLYATVSVIIKGMGGYLLPQLLKSVTLESDGNITAEYTSDELQLGEQKFSEIDMDNPASQQQVINFIMMKLMFNTLSADDITAATQGRNYADSPRGLAFWYLKNDLLYVKLNLPSIISLAMQGQGQTVDAHLIAGIADAILKSNPFLLKTLLGVVSESLDNSLLSMIANMDHQSFQMFFSWIKEGIPMQIEKENGHTHIYLNREALSPLIA | |||||||||||||||||||
1 | 4iiqC | 0.08 | 0.06 | 2.57 | 0.74 | SPARKS-K | IQVYSRHPPEDGKPNYL--------NCYVYGFHPPQ----IEIDLLKNG-----EKIKSEQSDLSFS-----KDWSFYLLSHAEFTPNS-KDQYSCRVKHV-------TLEQPRIVKW---DRRTHSLRYFRLGISEPGYGIPEF---------------------ISAGYVDSHPITMYNSVSQLEPRALWMEENLAPDHWERYTQLLRGWQQAFKVELKQLQHHYNHSGFH--TYQRMIGCELLEDFLQYAYDGQDFLIFNKDTLSWMAMDNVADIIRRVWEAN-RHELQYQKNWLEEE--------CIAWLKRFLEYGKDALQRTEPPKVRVNHKTLYCRAYGFYPPEISI | |||||||||||||
2 | 1bp1A | 0.09 | 0.08 | 2.98 | 0.86 | FFAS-3D | -DYSDSFKIKHLGKGHYSF-----YSMDIREFQLPSSQISMGLKFSISNANIKISGKWKAQ-KRFLKMSGNFDLEGMSISADLKLGSNPTSGKPTITCSSCSSHINSV------HVHISKSKVGWLIQLFHKKIESALRNK---MNSQVCEKVTNSVSSKLQPYFQTLMTKIDSVAGINYGENHHNPPPFAPPVMEFPAAHDRDYFFNTAGLVYQEAGVLKMTLRDDMIPKESSTPPHLSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYI-------VPILV----------------------LPRVNEKLQKGFPLVLQPHQNFLLFGAD--------- | |||||||||||||
3 | 3rwxA | 0.13 | 0.06 | 2.26 | 0.46 | HHpred | ------TDYVGESVATIVPNEDGTINVTYDSGS-G--EF-LNIV------TSTFEGSGQVEAGADFTLTGSIDEQQLTL-VNVPSV-GGLTIEFIQGTLPIS-------YHVSGTYN-EA-NLSVSVGST--TYPDI--------------------------TDCVSIRSSDDTVELTL-GLSNLNSQT--------------------G-RANLGDFTVTDV-VTSTDNSIFIEGSNNLSGTVSNSETNITFTF-------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 6n2bA | 0.13 | 0.11 | 3.95 | 0.67 | MUSTER | YAVYSRGSFLPNYKFTVRGGS-SGERIQTQG---EFKAIGVNNLICKGPEVIVNGG------GNSIEIKEIMYIQN---KLVFNGAPNTNPNTLNANKIYTGLGGMELNGYGYYKANEIYSDGEQVKNYGNFEIGSIGIVKKLTVTDNGRTTIKS--ATLYCDQLERVFIEAGATLVTRAISISGGTIEGNPSATFPSYPPFIDDIKNFFDSRMSVTTLPADPVGATTLGSVYDKSATPWEIVVYGES----GINDSELITEVNSKLGSFPSNVRL-----YLASKGNITFSNPTSL---PLYNPTTGKL--VIEGAIITL------GSTFNINISGAGIELIYKESSITSTLN | |||||||||||||
5 | 4ufcA | 0.10 | 0.09 | 3.27 | 0.71 | CNFpred | RDLNLE---NATTTTRYQVD---DVTYTRTTFASFTNVIIMHIKASK-ANALNFTIAYNC----PLVHKVNVQNDQLTVTCQGKEGLKAALRAECQIQVKT---NGTLRPA-GNTLQINEG--TEATLYISAATNYVNYQDVSDESHRTSEYLKRAMQIPYEKALKNHYKKQFDRVRLTLPASQLETPKRIENFGNGEDMAMAALLFHYGRYLLISSS--------------PGGQPANLQGIWNN-SKYTININTEMNYWPAEVTNLSETHSPLFSMLKDLSVT-GAWLAQHIWQHYLFTGNKEFLKEYYPILKGTAQFYMDFLVEWLVVSPSVSPEHGPITAGCTMDNQIAF | |||||||||||||
6 | 3rwxA2 | 0.11 | 0.03 | 1.02 | 0.91 | HHsearch-2 | ANLSVSVGSYTDCVSI--RSSDDTVELTL-GLTGRAGDFTVDV-VTSTDNSIFIEGSINTTTPITGTLSGTVSNSETNITFTF-PGA-PID-------IT-AFG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 4dtdA | 0.09 | 0.08 | 2.91 | 0.93 | Neff-PPAS | -----------------------------TKATPDFPTHFPKSSIGIENELAGLVVAPANSAQ-KFGYVKSAQGDALFLTKDN-------QGSYQRPPSLQDG---------------KNYQNWQTHTVELVSYPCEDDKAAVETRKQALWLATHFTTHIDQSNHQPLAPIQDGRFVIEITNAKHVIAAGNGISAESQGGTSATPELRLLESAPWYQKSLKSQFASLTSAENL-DDKELAANVFAYLTSIYLKTAELAKKFGIYINNANGLTDPKVKNAWEILPRTKPSKIVEILSKSDAKAVKHIKPQLQSRSESLSKNVFQYFQDGGINNATVGDPELAILFEFRTVPNELQ | |||||||||||||
8 | 3rwxA2 | 0.11 | 0.03 | 1.02 | 1.27 | HHsearch | ANLSVSVGSYTDCVSI--RSSDDTVELTL-GLTGRAGDFTVDV-VTSTDNSIFIEGSINTTTPITGTLSGTVSNSETNITFTF-PGA-PID-------ITA-FG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 5oqlA | 0.12 | 0.10 | 3.61 | 0.86 | SP3 | LDVAFRPD---SKQIAISTLDG---QLTFWSVSEAQQVSGVDSGGRRITDRRTAANVAGTKNFNTIRYS---MDGTCLLAGGNSTTTMVLLKKFTVSVNLSLSGTQEFLNSKLMTEAGPVGLLDDQGE------ASDLEDRIDRSLPGSKRGDPGARKKFPEVRVSGVAFSPTGNSFCAASTEGLLVSLDNTVQFDPFDLNMEITPASTLAVLEKEKDYLKALVMAFRLNEAYQAIPYTDI------GLVVEQFPVPRLLRFVAAQTEQSPHMEFCLLWIRALIDKHGPWLAANRGKVDVELRAKMRDEIRRLADENVYMVDYLLNQ--------------------------- | |||||||||||||
10 | 4dtdA | 0.09 | 0.07 | 2.82 | 1.00 | PROSPECTOR2 | -----------------------------TKATPDFPTHFSSIGIENELAGLVVAPANSAQKFGYVKSA---QGDALFLTK----------------------DNQGSYQRPPSLQDGKNYQNWQTHTVELVSYPCEDDKAAVETRKQALWLATHFTTHIDQSNHQPLAQSEDGRFVIEITNAKHVIAAGNGISAESQGQTITTPPELRLLESAPWYQKSLKSQFASLTSAENLDDKELAANVFAYLTSIYLK--TAELAKKFITPNANGLTDPKVKNAWEILPRTKPSKIVEILSKSDAKAVKHIKPQLQSRSESLSKNVFQYFQDGGEVTVGDKHSPELAILNELQSYLPKT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |