Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | YKSMPVGDSINSKMTAKVTDVCQAKGCWMTLDLEDGSEVMVKFKDYGFFVPKDIKGKEVIINGKAFVNEVPVDEQRHYAEDAGKSK |
1 | 1wydB1 | 0.09 | 0.09 | 3.50 | 1.06 | SPARKS-K | | ADVTPEYDGKEVIWAGWVHLLRDLGKKFIILRDK-TGLGQVVVDKNSSAFSQELQESVIQVRGIVKADKRAPRGIELHAEEITLLS |
2 | 1wydB1 | 0.19 | 0.19 | 6.00 | 1.08 | MUSTER | | YRSHPEYDGKEVIWAGWVHLLRDLGGKFIILRDKTGLGQVVVDKNSSAFSQELTQESVIQVRGIVKADKRAPRGIE-HAEE-SKAK |
3 | 1wydB1 | 0.17 | 0.16 | 5.36 | 1.01 | Neff-PPAS | | ---TPEYDGKEVIWAGWVHLLRDLGGKFIILRDKTGLGQVVVDKNSSAFGISQTQESVIQVRGIVKADKRAPRGIELHAEEISKAK |
4 | 1wydB1 | 0.15 | 0.15 | 5.08 | 1.06 | SP3 | | IADVTPEDGKEVIWAGWVHLLRDLGGKFIILRDKTGLGQVVVDKNSSAFSQELTQESVIQVRGIVKADKRAPRGIELHAEELSKAK |
5 | 1l0wA1 | 0.08 | 0.08 | 3.19 | 1.04 | SPARKS-K | | GSLRETHVGEEVVLEGWVNRRRDLGLIFLDLRDR-EGLVQLVAHSPAYATAERVPEWVVRAKGLVRLRPEPNPRLATGRVEVELSA |
6 | 3kf6A | 0.20 | 0.16 | 5.21 | 0.55 | FFAS-3D | | ----------WIQIVGYIAAIDIYEGHVLTVDDCSGMVLRVVFIIQDDFAISMSPGNVVCVFGKINFEELRNDEWKAWQK------ |
7 | 2pi2F | 0.08 | 0.06 | 2.34 | 0.46 | HHpred | | AGMLAQFIDKPVCFVGRLEKIHP-TGKMFILSDGEGKNGTIELMEP-L---DEEISGIVEVVGRVTAKAIL--------------- |
8 | 1b8aA1 | 0.14 | 0.14 | 4.73 | 0.93 | MUSTER | | SSEITEENGQKVKVAGWVWEVKDLGGKFLWIRDRDG-IVQITAPKKKVLIPKLRSEDVVAVEGVVNFTPKAKLGFE-LPEK-NRAE |
9 | 1nnxA | 0.06 | 0.05 | 1.98 | 0.95 | CNFpred | | ---------TWVTLRGNIVERIS--DDLYVFKDA-SGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDW------------NSVEI |
10 | 1nnxA | 0.12 | 0.10 | 3.69 | 0.65 | HHsearch-2 | | VESKSLRDDTWVTLRGNIVERIS--DDLYVFKDASG-TINVDIDHKRW-NGVTTPKDTVEIQGEVDKDWNSVKQIRKV-------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|