Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | EYGKVDQGRVIAFDKQAKTVTLIQDKLAEPMNPDYSTLPPHTYKLPADPAEMGPEPKAGLRMKLDTKANIVKIFNPKTQAFEDITITVIDLQQNIDRQHPLVFDKATDTAKKFPMVDRDKKTITIYSGRQKMLCTFSVPDEYFSMPDHTWEAGDEVRVYYKTEGVSLRFMNISKTDIFKK |
1 | 6igbA | 0.07 | 0.07 | 2.94 | 0.78 | SPARKS-K | | RVAHTSNPSYLTFAPDQRTLFVVNE--NGRGGKGDTVGRATSYRFPISGRQISQQTLADHYSSLSHDGRYLFVANYSVQPEGSVAVLPVRADGSLAPVVQVESHQASKVHPRSVVSSPDGQYLFAPDLGADKVFVYRYAPEQAERPPAFVPGSGPRHLIFSADGRFAYLTLELSGQVMVF |
2 | 3dsmA1 | 0.10 | 0.08 | 3.09 | 0.52 | FFAS-3D | | ----LSDEKAYVTQIWDYRIFIINPKTYEITG---------YIECPDDESGSTEQVQYGKYVYVWSYQNRILKIDTETDKVDELTIGIQPTSLVDKYNKWTITDGGYEGSPY----GYEAPSLYRIDETFTVEKQFKFK-----------LGDWPSEVQLNGTRDTLYWINVPVRPFLE- |
3 | 6gc1A3 | 0.16 | 0.12 | 3.88 | 0.47 | HHpred | | --ADSESSTVRTVSLKDGAVKHLVGGERDPMNLFAFGDVDGVAKL-QHPLGVTWDKKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTGDTTESTFNEPGGLCIG----ENELLYVADTNNHQIKVMDLETKMVSVLPIF----------------------------------------- |
4 | 6h9cD | 0.12 | 0.11 | 3.95 | 0.75 | MUSTER | | NIGNLSAEKQISLYDGQPFISEQDVAAGDPNTPALEGPDGYVIAVDAGT-PIAPEFRDSNGEKLDPST-RVIVQKCDRQGNPLGDGIIFNDTGRFNYNK-MRTDPDYMRKTAKSLMVDEREIVKVFVDVPDGANGYDAERSRFTLGDDTSDFGKAVEIVDHDD------LTEGETQAVKS |
5 | 3v64C | 0.08 | 0.07 | 2.80 | 1.05 | CNFpred | | ------NAIALDFHHRRELVFWSDVTL----------DRILRANLNGVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA---------IALHPMEGTIYWTDWGTPRIEASSMDGSRRIIADTHL--FWPNGLTIDYAGRRMYWVDAKHHVIERA |
6 | 6gc1A3 | 0.14 | 0.11 | 3.60 | 0.42 | HHsearch-2 | | PWSCLESSTVRTVSLKDGAVKHLVGGERDPMNLFAFGDVDGVGAKLQHPLGVTWDKKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTGDTTESTFNEPGGLCIG----ENELLYVADTNNHQIKVMDLETKMVSVLPIF----------------------------------------- |
7 | 4mboA2 | 0.14 | 0.11 | 3.82 | 0.86 | Neff-PPAS | | NVKTNVRSRIMKLDDERQTETYITQINPEGKEMYFASGLGNLYTIIGSDG-----------SPVNLLNAEVKILKTNSKNLTD------SMDQNYDSPEFEDVTSQYSYTNDGSKITIDWKTNSISSTTSYVVLVKIPQSGVLYSTVSDINQTYGSKYSYGHTN---------------- |
8 | 1zeqX | 0.18 | 0.08 | 2.53 | 0.57 | HHsearch | | ----------------------------------------------------------------------------------------METMSEAQPQVISAT-------GVVKGIDLESKKITIHHDPPEMTMRFTITPQT-KM--SEIKTGDKVAFNFVQQGNLSLLQDIKVSQ---- |
9 | 1q7fB | 0.11 | 0.10 | 3.63 | 0.91 | SP3 | | AQNDINNHRIQIFDKEGRFKFQFGECGKRDSQLLYRSPTHQIQIYNQYGATILQHPNKGRIIVVECKVMRVIIFDQNGN-----VLHKFGCSKHLEFPNGVVVNDK---QEIF-ISDNRAHCVKVFNYEGQYLRQIGGEGI-TNYPIGDNHNNFNLTIFTQD-GQLISALESKVK--HAQ |
10 | 2kh2B | 0.06 | 0.06 | 2.47 | 0.69 | PROSPECTOR2 | | DIQMTQSPSSLSA-SVGDRVTITCRTSGNIHNYQKPGKAPQLLIYNAKTL----ADGVPSRFSGSGSGTQFTLTSLPFTFGQGTKVEIKRTGGGGSGGGGSGGGGSGGGGSEVQLVESGGGLVVRQAPGKRLEWVAYISSGGGSTYFPDTVKGRFTISRDNAKNTLYTLVTVSSHHHHHH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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