>PF16148 (360 residues) PNTYVFERDGNTTVSFSGQTTRIQMAQEIVSGLSNTANTETILDNMFAHQEGANDFSDAA LNASNKSVRSKTAASTDYYAANTTDAATIKATFDFFIEEQVNTVFPNWDTDASAGVAGSI QEAGGGSTRYVSEKGLEYNQAFAKGLIGALMVDQIVNNYLSPAVLDAGDNEANNDADVLD GDNNYTTMEHKWDEAYGYLYGNEANPAVPVLGADNFLNKYLSRVENDEDFTGIAMEIYNA FKLGRAAIVAKDYALRDAQANIIKEKISEIIAVRAVYYLQQGKADLGSDWASAFHSLSEG YGFVYSLQFTRKPGTNEPYLSKDEVLFYTDSLMEGNGFWDITPETLDTISNEISAEFSFT |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | PNTYVFERDGNTTVSFSGQTTRIQMAQEIVSGLSNTANTETILDNMFAHQEGANDFSDAALNASNKSVRSKTAASTDYYAANTTDAATIKATFDFFIEEQVNTVFPNWDTDASAGVAGSIQEAGGGSTRYVSEKGLEYNQAFAKGLIGALMVDQIVNNYLSPAVLDAGDNEANNDADVLDGDNNYTTMEHKWDEAYGYLYGNEANPAVPVLGADNFLNKYLSRVENDEDFTGIAMEIYNAFKLGRAAIVAKDYALRDAQANIIKEKISEIIAVRAVYYLQQGKADLGSDWASAFHSLSEGYGFVYSLQFTRKPGTNEPYLSKDEVLFYTDSLMEGNGFWDITPETLDTISNEISAEFSFT | |||||||||||||||||||
1 | 3zheA | 0.10 | 0.09 | 3.40 | 0.77 | SPARKS-K | CNQLEKYGQTENVHSPVMAMLRRKGRKQLIEIMKRDGDCTSSINKLWIVIR-----DKEKNMAIAVLLTMFCGELQEMLSLPDDKY---PALWNMYIGDFHRYMPDEEI-QKCLAVGYYSRAIDLDPNQ-----GRAFHVLAGLRLNVAQKLRLMILGQLADAPYKKGTELLEYLKFPQKES------TDKLMVDFVIWALNEKSKRMDYQMTGIKIVNEFKAEIEQKLEFDWS-LIMSTCRLASKLAMKKFFQQFYNCFDTISTLYITIYSAEAISWISDSAEILGHFAKTKWNELNDLVMNHINSVFTSMSLTINPSISM---TSFLLNGPIS----EPNVEFLSQLINYLVSVEFPP | |||||||||||||
2 | 6h8qA2 | 0.14 | 0.12 | 4.01 | 0.96 | FFAS-3D | --FERFKRDVNLDV----RIHSIQVLTEASSLGYLDDSEILIISSLMFDEEFDPF------KTSSFNKRSKF-------------LSTVAKFLARVIKEKFDEFIKTHEDLPK------------------EVDGLEVGPVVQVGIF-IKILNDSLIYHLKDC--AEVDSRTKIRMLTQAAEFLSPYISTHLKTICNLLISDTESNELIPIDRNSVFHGLCAGANNPKIQTKDSADILCPLLESDDWISIGYETELKKITDKTIKAFMDDIFAKFIHHIHHFKKELQEKFLNQIATLKIH--LKKFLQEKMDPNNSRDDYKDSLYELYINKLTILGRDYPIDEELLQLFLNNFVSRI--- | |||||||||||||
3 | 5xefA | 0.11 | 0.03 | 1.20 | 0.25 | HHpred | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QAWQRY-QNDI-TSNPIKNYERCIIEFRKLEELLNTFKLQDGDELLEK---------LERIFEELKLQLNP-D-ITKDLYDSLFGLYDWISIQIQT-KVTRE-V-KDIDAIVQVLQDLI---DGYRG------------------- | |||||||||||||
4 | 6ek7A | 0.11 | 0.10 | 3.71 | 0.69 | MUSTER | -------------------IFTKEDLINLKLYVRKGLTRQDEVEAYLGYKKIDVAGLEKDIKLLFDEIHN-HALNNDVEQAVLQQSLDLDIAAKNIISTGNEIINLINQMPITLRVKTLLGDITDKQLENITSDILDMKGDINRHQTTTENVRKKVSDYRITLTGGELSSGDKVNGLEPQVKTKYDLMEKSNMRKSI-LDEKIKEKRQRIEQLKKDYDKFVGLSFTGAIGGIIAMAITGGIFGAKAENARKENALISEVAELESKVSSQRALQTALEALSLSFSDIGIRMVDAESALNHLDFMWLSVL-QIQFAMINNALRLTSFVNKFQQVITP---WQSSARQLVDIFDEAIKEYKKV | |||||||||||||
5 | 4uqiA | 0.09 | 0.07 | 2.55 | 0.88 | CNFpred | ---------------LGVVTAATSLITTLAQKNPE-SLAVSRLSRIVTSASDLQDYTYYFVPAP--WLSVKLLRLLQCYPPP---DPAVRGRLTECLETILNKAQEPP----------KSK-------------KVQHSNAKNAVLFEAISLIIHHDS--------------------------EPNLLVRACNQLGQFLQ------HRETNLRYLALESMCTLASS---EFSHEAVKTHIETVINALKTEDVSVRQRAVDLLYAMNAQQIVAEMLSYLETADYSIREEIVLKVAILAYVDTILNLIRIAG------DYVSEEVWYRVIQIVINR----DVQGYAAKTVFEALQAPACHE | |||||||||||||
6 | 2pffB | 0.14 | 0.12 | 3.99 | 0.49 | HHsearch-2 | PEPTGFAAD-------DEPTTPAELVGKFLGYVSSLVEGDQVLNLCLTEFECYLEGN--DIH----ALAAKLLQEN------DTTLVKTKELIKNYITARIMAKRPF-DKK--SNSALFRAEGNAQLVAIFGGQGEELRDLYQTYLVGDLFSAETLSELIRT-TL-------DAEK-VFTQGLNIL----EW------LENPSNTPDKDLSCPLIVLAHYVVTAK----LLGFTPGELRSYLKGVAIAETDSWEFFVSVRKAITV-LFFIGVRCYEAYPNT-------SLPPSIL------EDSLENNEVPSPMLSISNLTQEQVQDYVNKTLPAQVAKNLPPQSLYGLNLTLRAKAPSG | |||||||||||||
7 | 6ek7A | 0.07 | 0.06 | 2.66 | 0.89 | Neff-PPAS | ------------------TKEDLINLKLYVRKGLSLPTRQDEVEAYLGYKKIDVAGEPKDIKLLFDEIHNHALNWNDVEQAVLQQSLDLDIAAKNIISTGNEIINLINQMPITLRVKTLLGDITDKQLENITSADHEVASALKDILDDMKGDINRHQTTTENVRKKVSDYRITLTGGELSSGDKVNGLEPQVKTKYDLMESNMRKSIKELDEKIKEKRQRIEQLKKDAITGGIFGAKAENARKEKNALISEVAELESKVSSQRALQTALEALSLSFSDIGIRMVDAESALNHLDFMWLSVLNQITESQIQFAMINNALR-----LTSFVNKFQQVITPWQSVGDSARQLVDIFDEAIKEY | |||||||||||||
8 | 1vt4I3 | 0.13 | 0.06 | 2.10 | 0.79 | HHsearch | ----------------------------------------------------------------------------------------------------------------------------------------EY--ALH---------RSIVDHYNIPKTFDSD-----DLIPPYLDQYFYSHIGHHLKERMTLFRM--VF---------LDFRFLEQKIRHDSAGSILNTLQQLKFYK--PYICDN-DPKYERLVNAILDFLPKIEENICSKYTDLLRIALMAEDEAIFEEAHK---------------------------QVQR--GGGGGGGGGGGGGGGGGGGG-GGGGGG- | |||||||||||||
9 | 2o5rA | 0.14 | 0.12 | 4.17 | 0.95 | SP3 | WD--EGPDVGGDHGPYR-QSERVEIYREHAERLVKVYAYPEEIEEREKLLSEGKAPHY-----------------SQEFEKFDTPERRREYEEKG--LRPAVFFKPRKDYVLNDVVKGEVVFKTGAIGDFVRSNGLTYNFACVVDDLE---ITHVIDDHLSLALYEAFEKAPGPDGKKLHGATSVEAFRDGYPEALVNYLGWSHPEGKELLTLEELISSFLDRLSPNPAIFD-----PQKLKWNGYYLRNP----IEKLAELAKPFFEKAIKIIDEEYFKKVLEITKER----VEVLSEFPEESRFF-FEDPAPVEIPE-EKEVFSQLKEELQNVR--WT---EEITPVFKKVLKQHGVK | |||||||||||||
10 | 5ugqA | 0.05 | 0.05 | 2.16 | 0.93 | PROSPECTOR2 | VEKLAYDRPDGDVAAESGIEAALGVFQTLPKRVAIWCNSDADNDRLRAEPQVDYSREGVAHIENETKQFVGRCVDKGKNFLAHVGTVNVAKDLDAIRAA------------------------LGDDKLTYDPNADPIEAELRQAKGFQDAFNNYAADCAK--------------NAGCPLGADPAKAVEVYHSLVDPLVDPDNPRISRTKDPRGLSYSDAIVGTIALYSPNLWQHLTDGL---SELVDNRGDTLLALADYRRDSHGRYNNSGDARVAINCVDQPPVTDRDKVIDEDRRARGTCAFWPVPPTSQPHAPATPYKAGVDLANQLRGSTVVFQGDSCIDEYVTAYLIGGTTPP | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |