>PF15993 (305 residues) HSISDFLVIVLIITPAVNLFWRGTWNLMYEYLPGDIITSSWLSLAIGSPVLLLAGLLQHP LRRLGSWLHGKNQGWHHLYLVVYVYVVASASVAQWRAFWNLPTYYFPAWVSVTGYGITAV VGTGLMVGCRILAFGSGCPAAISVDFEPDPFRVPLRFHTDRAERFSWRFVLDVVFSVFVA DMISLAYWAGYWGLLDVLMFPEDPCFAYWVSFGIGYAIHLVTTFLQFPVHTAYRNMRGTE REFWKRLALEDAFLFLVNFGVINSWRGLWDLYDCYLLPDQPRLSAWVSHGLGAVLCYLVC AGRTL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | HSISDFLVIVLIITPAVNLFWRGTWNLMYEYLPGDIITSSWLSLAIGSPVLLLAGLLQHPLRRLGSWLHGKNQGWHHLYLVVYVYVVASASVAQWRAFWNLPTYYFPAWVSVTGYGITAVVGTGLMVGCRILAFGSGCPAAISVDFEPDPFRVPLRFHTDRAERFSWRFVLDVVFSVFVADMISLAYWAGYWGLLDVLMFPEDPCFAYWVSFGIGYAIHLVTTFLQFPVHTAYRNMRGTEREFWKRLALEDAFLFLVNFGVINSWRGLWDLYDCYLLPDQPRLSAWVSHGLGAVLCYLVCAGRTL | |||||||||||||||||||
1 | 3aqpA2 | 0.10 | 0.10 | 3.52 | 1.03 | FFAS-3D | --YYGPHLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLL-----AAAALYQYATGPVRGFAVILAIGVVALVFSRHLLERLADRYTLRAEPNVEVFPGKEAVITEELRRNAVMAVLVGLGLILLYILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTSLTTLL-----PILALLFLGGSVLRDFALAIFVGIFVGTYSSIY--- | |||||||||||||
2 | 3rkoC | 0.08 | 0.08 | 2.94 | 1.48 | CNFpred | --GISIHLAIDGLSLLMVVLTGLLGVLAVLCSEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFF--------FFWEMMLVPMYFLIALWGHKRITAATKFF---------IYTQASGLVMLIAILALVFVHYNA-VWTFNYEELL-------NTPMSSGVEYLLMLGFFIAFAVKMPVVHGWLPDAHSQAPTAGSVDLAG--ILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFATDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYE | |||||||||||||
3 | 6idpA | 0.07 | 0.06 | 2.58 | 1.02 | SP3 | LGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAIIDHYWLWWLASAWTGAMLYFYYSVCRANGNLLPGTLMMVTSVLNLILDPIFIFT-------------FDLGIDGAAIATIIAFGVGIAIVAPKVAQ------------------RQWTSYQWQDLNISQSLTALGHIMGPAMLSQLLPPLSSMFATKLLFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLGAKEIRQLVRIACQFVLGFQLLIALVTYVFATPLAELM-TSETEVSQILNLHLVIVPISLGALGICML | |||||||||||||
4 | 4j05A | 0.08 | 0.08 | 2.94 | 1.00 | PROSPECTOR2 | PQI--KLVLLAGVGFFLDAYDLFAPMLAQVYFPKTGTLLCFIFANQGWGSFVGSLVTIVTISGFKHRLKSGHTHDVDKAWRILIGLSLIPAFGTLYQRWQEFVAYFSTWNHFRNLLGSMLGWFLVDIAFYGI-NLNQSVVLAQIGFAGK------------TGDVYDKLFQLATGNIIVTALGFLPGYYFTLFLIDIV--------GRKKLQFMGFIMSGLFLAI------LAGEIDHIGKGPLLACFTFMQFFFNFGANTTTFKCGAILVFNQLKAKIGTSAVLWIFFSTCILGFISTEERRAR | |||||||||||||
5 | 5xjjA | 0.09 | 0.08 | 3.02 | 1.00 | SPARKS-K | GVALATSFTNVTGFSIMYGLVGALETLCGQAYGAKQYSAIASNIPICFIISIIWFYIENILISLGQDP----DISRIAGSYAFWLIPVLFAQAIVIPLTRFLLTQ----GLVLPLLYTAVTTLLFHVFVCWVFVLV-------------------------FVLGSNGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGFVSDFVSCVKQFFQYGVPSAAMICLEWWLFELLILCSGLNPKLETSVLSICLTTETLHYVISSGVAAAVSTRVSNNLGAGNPQVARVSVLAGLCLWLVESAFFSIL | |||||||||||||
6 | 3mktA | 0.12 | 0.12 | 4.16 | 0.98 | FFAS-3D | -GFVDTIMAWLPSILFGVGLLMALVPVVAQLNQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRIPLNWIFAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIG--AAVSIRVGHKLGEQDTKGAANVGLMTGLATACITALLTVLFREQIALLYTENQVQLLLFAAIYQCMDAVQVVAAGSLRGYKTFISYWVLQPLGAKGFWLGFIIGLSAAALMLG---- | |||||||||||||
7 | 5zbhA | 0.13 | 0.11 | 4.00 | 0.28 | HHpred | -SFSDLLVAIMCLPFTFVYTLMDHWVFGEAMC---KLNPFVQCVSITVSIWSLVLIAVERHQLIINPRGWRPNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPKDKYDQFLSLVLQYFGPLCFIFIYIRLKRDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAI-----G-------RNT----NGV-ITKDEARAALINMQMGETNSLRRWYNQTPNRAFRGAYDSSETKRINIMLLSIVVAFAVCWLPLTIF----NTVFDWN-HQITCNHNLLF-----LLCHLTAMISTC | |||||||||||||
8 | 5y50A | 0.11 | 0.11 | 3.90 | 0.89 | MUSTER | GFSVVFGLASALETLCGQANGAKQYEKLGVHT----YTGIVSLFLVCIPLSLLWTYIGDILSLIGQDAMV-AQEAGKFATWLIPALFGYATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLCWSLVFSLGAAIAIGVSYWLNV-MTFSSSCSKSRATISMSLFEGMGEFFRFGIPSASMICLEWWSFEFLVLLSGILPNPKLEASVLSVCLSTQSSLYQIPESLGAAASTRVANELGAGNPKQARMAVYTAMVITGVESIMVGAIVFGARNVFGFSSETEVVDYVKSMAPLLSLSVIFDALHAA | |||||||||||||
9 | 3rkoB | 0.08 | 0.08 | 2.97 | 1.45 | CNFpred | NLFIASMVVLVLADNLLLMGWEGVGLCSYLLIGFYNGAAAMKAFVVTRVGDVFLAFALFILYNELGTL-NFREMV-MLMWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVL-------------------HLVGIVGAVTLLLAGFAALVVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEMGGLKSIPLVYLCFLVGGAALSALPVTAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIV | |||||||||||||
10 | 1vt4I3 | 0.10 | 0.04 | 1.46 | 0.92 | HHsearch-2 | -----------------------------EYA-----------------LHRSI-VDHYNIPKTFDSDDL---IPPYL----DQYFYSHIG------------HHL--------------------------------------------------------------------------------------------KNIEHPER---------MTLFRMFLDFRFLEQKIRHDSTAW--NASGSILNT-L--------------QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |