Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | MLSMIVLLFLLWGAPSHAYFSYYTAQRFTDFTLCMLTDRGVIANLLRYDEHTALYNCSASKTCWYCTFLDEQIITFGTDC |
1 | 5d9qD2 | 0.13 | 0.12 | 4.36 | 0.81 | SPARKS-K | | SLSPGETAIISCRTSQSGSLAWYQQRPGQAPRLVIIPDR-FSGSRWGADYNLSISNLESGDFVYYCQQYEFFGQGTKVQV |
2 | 3gztQ | 0.32 | 0.30 | 9.05 | 0.28 | FFAS-3D | | --DTLSQLFLTKGWPTGSYFKEYTPQLYCDYNVVLMKDMSELADLILMDITLYYYQQTDEANKWICTILNTQ--TLGIGC |
3 | 2d1cA2 | 0.22 | 0.17 | 5.53 | 0.29 | HHpred | | ----GVDVFVETNLLPEALGK--ALEAGTPFRLKMISNRGTQ----VYPPTGGLTDL---VDHYRCRFLYTGEAKDP--- |
4 | 1jmmA2 | 0.17 | 0.15 | 4.91 | 0.69 | MUSTER | | FLKASAVDDAFSKSTSKAKYV--KILQLDDLDITNLEQSNDVAS-------SELYGNFGDKAGWSTTVSNNSQVKWGS-- |
5 | 2b5nA | 0.16 | 0.12 | 4.17 | 0.60 | CNFpred | | -----LCAIGLWTD---ISARILKLPSFELLHKEMLGGEIIPRSI-------LMTTFE-SSHYLLCALGDGALFYFGLNI |
6 | 2d1cA2 | 0.19 | 0.17 | 5.64 | 0.45 | HHsearch-2 | | RRVVGVDVFVETNLLPEALGKALEDLAGTPFRLKMISNRGTQ----VYPPTGGLT---DLVDHYRCRFLYTGEAKDPERF |
7 | 1jmmA2 | 0.19 | 0.16 | 5.26 | 0.66 | Neff-PPAS | | FLKASAVDDAFSKSTSKAKYVQKILQ-LDDLDITNLEQSNDVASS-------ELYGNFGDKAGWSTTVSNNSQVKWGS-- |
8 | 2d1cA2 | 0.20 | 0.17 | 5.60 | 0.38 | HHsearch | | RRVVGVDVFVETNLLPEALGK--ALEAGTPFRLKMISNRGTQ----VYPPTGGLTDL---VDHYRCRFLYTGEAKDPER- |
9 | 1vjkA | 0.11 | 0.10 | 3.60 | 0.57 | SP3 | | SVKVKVKYF--------ARFRQLAGVDEEEIELPEARVRDLIEEIKRHEKKEEVFGEGYDEDADVNIAVNGRYVSWDEGD |
10 | 2va0A | 0.05 | 0.05 | 2.35 | 0.40 | PROSPECTOR2 | | SPAKRLLMVGNAINRNTQQLTQDLRWSLRFVYIVRPLPPGIMVLAPRLTAKHPYDKVQDRNRKLYGRHIGNSVKVVTISA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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