>PF15774 (395 residues) HSMCSARVQLPKKPLVPEMGPACKPGRVPHLPSTCGSSALQGQRRNKRHPQPFGHFLDFL TESQVLDSLETVVEKATERMAAMKTEAGVPLVEVQDPVEVPSGGRRAHARPSLSTVHRHR VQPTLCTGHPNNYPSSSSSMSNCHSSLMAGYLGSHSRDSDLGAQGLGSLPPVRDKLLLEK NLKRLLQLERKGKGLSQSCSQRDSLLWDSLGSQTSFQWTQEQPLSWFSGLLGSSSGVPEA SEPRPGEQEPIFRKREFNKEIKSLLSQLESLDLPGYCPLREPHRTLNFLADHRLFPALQS VVSQAVDKLRGARCRNGRPLFPTSLEPTSELQVDGNLPPLGSEPATPTNGGQPQASPRPT VSSPKMLQRKRKDRGGSPSMSSAQVATRFKLKVTP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | HSMCSARVQLPKKPLVPEMGPACKPGRVPHLPSTCGSSALQGQRRNKRHPQPFGHFLDFLTESQVLDSLETVVEKATERMAAMKTEAGVPLVEVQDPVEVPSGGRRAHARPSLSTVHRHRVQPTLCTGHPNNYPSSSSSMSNCHSSLMAGYLGSHSRDSDLGAQGLGSLPPVRDKLLLEKNLKRLLQLERKGKGLSQSCSQRDSLLWDSLGSQTSFQWTQEQPLSWFSGLLGSSSGVPEASEPRPGEQEPIFRKREFNKEIKSLLSQLESLDLPGYCPLREPHRTLNFLADHRLFPALQSVVSQAVDKLRGARCRNGRPLFPTSLEPTSELQVDGNLPPLGSEPATPTNGGQPQASPRPTVSSPKMLQRKRKDRGGSPSMSSAQVATRFKLKVTP | |||||||||||||||||||
1 | 2pffB | 0.18 | 0.16 | 5.36 | 1.04 | HHsearch-2 | MDAYSSQLQEQFNKILPEPTEGFAADDEPTTPAELV-GKFLGYVSSLVEPSKLTEFENCYLEGNLVKTKELIKNYITARIMAKRPDKKSNSAL---FRAVGEGNAQGNTDDYFEELRLYQTY-HVLVGDLSELIRT---TLDAEKVFILEWLENPSNTPDKDY-----LLSIPISCPLIIQLAHYVVLRSYYEAYP-NTSLPPSILEDSLENNSISNLTQEQVQDYVNKT---NSHLPAGISLVNGAKNLVVPPYGLNL---TLRKAKAPSGLDQ---SRIPFRKLKFFHSHLLVPASDLINKDLVKNNVSFAKDIQIPVYDTFD--GSDLRVLCIIRLP-VKWETTTQFTHILDFGPGGASGLGVLHR-NK--DGT----GVRVIVAGTLDINP | |||||||||||||
2 | 3iymA | 0.12 | 0.11 | 4.00 | 1.28 | Neff-PPAS | --VFSTGAGEPTRDQEFALPVHKAFPLFGSVSDKYRRNPRYAEFRAHSE-FTDGVFGTHLAVSSLLRLAQQLVHAHVNMGLPLGDFAPLASSDVRIPSALASVVNQFGEFSSPSIGTRFLLRDFEHAVSRVVFLADQLWTNGNSHHIFARWLPMSNNDGNFKTIVASRL----LEFISAGDLSILPTVLEDAVLSGEVPEAWEQVKDLLGDAPGVGQ---VDRRDRFDFLFKSYADVGQFTTAFTTQ---------------AASDVLTELGLPWNSP-SAGHLNWQYSTKQ-RFTFLADTWAKLSAAYSQSGLATRQSATGSHAQMVDLTSVEGVTVLKAALALSAPEFSLAACFPPSCIFVGGLTRRVVV----TTSLSVSQRATEFCQMDWR | |||||||||||||
3 | 2nbiA | 0.13 | 0.11 | 3.97 | 1.20 | PROSPECTOR2 | QPSDLNPSSQPSEASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMF----------------------------TPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNSPEPSSQPSDCGEVIEECPIDATAVGRPDCNVLPFPNNIGCPSCCPFECSPDNPMFTPSPDGSPP------------NCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSESRPPDCTDPSVNRPDSPSPDGSPPVCSPTMMPSPLPSPTE | |||||||||||||
4 | 5yfpC | 0.07 | 0.07 | 2.87 | 0.86 | SPARKS-K | HIERLLVAELAEDALETGCPHQEQVVVMAKEATEDAQRTVMKLFSRLSGISKFDKLLDGLTYDLAIRLFKIYDLEEREDLRIEAIRNIIKKKEIEIEIKKLPNSKNTARLQDETPKVIEYPTNKGLYQEIMSTRTAPRGYKHFLINGINNSISEMFGEMREKYVGDQKFDVLDNMDWIFNELIIVKEHIANCP---PHWNIFEVYFDSLITDLVESEPETIIILDILAFDKTQDTLKQDKSVIGDKEKELNLIVVKMTEWIGNLEKALERSTPPGLLFLDGTKTCFQMFTQQKILVGVVERFSDLLTKRQKNWISKISEEINYNHKYDIDPESITPEDE----------------CPGGMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDG | |||||||||||||
5 | 5a9q4 | 0.13 | 0.09 | 3.23 | 0.71 | FFAS-3D | ----------------------------------------------------FSDFLQSFLKHDLVEEYENICGSQVNILSKIKFSKTASLYRDRIQSAEEESVVTAVNASEKTVVEALFQRDSLESIAKDEIGIEYAKSVYWENTLHTPLVTE--LDPDAPIRQKMPLDD-LDREDEVRLLKYLFTLIRAGMELEPVEGNPYRRIWKISCWRMAEDELFNRYEAIYAALSGNLKQLLPVCDT--WEDTVAYFRVMVDSLVEQEIQTSETEELPRLGANQEHYHILRFMTHLILFEVSIEVLKTYIQLLIREKHTNLIAFYTCHLPQDLAVE--------------------------------------------------------------- | |||||||||||||
6 | 4jndA | 0.08 | 0.03 | 1.01 | 0.33 | HHpred | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DHIGDRRRSVSLLEEAFADEMEKTSYDV----EVIAGPVHDVHDIFQKMMKRGQAHWVSHLIATEIDEKFSEVAFRDVQYNPDIYVTDSTFNWPIDKILQQNAETCPIL-SEKWSGIHVSGDQLKGQRHKQE----------------------- | |||||||||||||
7 | 2z6bA | 0.14 | 0.11 | 3.92 | 0.67 | MUSTER | HPP---RAQGDVMGI-----PTEKL---PSVP---TSAAMSGIGGSVTGPVEYGHFLD---WKT-----NGIV---------LGTYGGIV--EKPNRLE-PTGQYPRRLGNDTNVLNQG-----------GEVGYDSSSNVIQDSNLDT---AINPDDRPLSEIPTDDNPNMS--------MAEMLRRDEGLRLKVYWDTEGYPTIGIGHLIMKQPVRDMAQINKVLSKQVGRE---ITGNPGSITMEEATTLFERDLADMQRDIKSHSKV-GPVWQAVNRSRQMALENMAFQMGVGGVAKFNTMLTAMLAGDWEKAYKAGRDSLWYQQTKGRASRVTMIILTGNLESYGVEVKTPARSLLAMAATVAKSSDPADPPIPNDS---RILFKEPVSS | |||||||||||||
8 | 3iqyA | 0.13 | 0.05 | 1.67 | 0.59 | CNFpred | ------------------------------------------------------NFDSRKQLLQYDDVLRQQREVIYKQRFEVID--SENLREI-------------------------------------------------------------------------------VENMIKSSLERAIAAYT--------PREELPEEWKLDG-----------LVDLINTTYLDEGALEKSDIFG----EPDEMLELIMDRIITKYNEKEEQ---------FGKEQMREFEKVIVLRAVDSKWMDHIDAMDQLRQ--------------------------------------------------------------------------------- | |||||||||||||
9 | 2pffB | 0.21 | 0.18 | 5.70 | 0.69 | HHsearch-2 | ----MDA--YSTRPLTLSHGSL---EHVLLVPTASFASQLQEQ-FNKILPEPVGKFLGYVSVGQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT--------KELIKNYITAR----IMAKRPFDKKS-----------NSALFRAVGEGNAQLVAIFQGNTEELRDLYQTYHTLSELIRTTLDEKVFTQG---LNILEWLE--NPS---------------------NTPDKDYLLSIPCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKHSQGLVTAVAIAETDSWESFFVSVRKAVLFFIGVRCYEAYPNTSSILEPSPMLSI-SNL-TQEQQYVNKTNSHKQVISLVNGAKNLNLTLRKAKLPVASPFHSHLLVSFNAKDIQIP | |||||||||||||
10 | 3cnfT | 0.09 | 0.08 | 2.96 | 1.13 | Neff-PPAS | --HYTSINNDTRVALDPKPNQIRTILRLLGPFQYFNFSETDRGHPLFRLPLK------------------------------------------YPSKAIPADELIDNLHSWMRSV---------------HLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDNIFDDSSTPYNVRIWHAPTMTEVNHILALRKSTLVSTHSSWHWDVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDALVEADRVVQRLIPLSSSTYVQRLAAISRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTAYTSMNYISNTGQGRIKHSLAVTGTTEH--TIA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |