>PF15759 (513 residues) SVVTLTPHPDGPSSQATAPMAMTTPHPDGHPPTNTISTITVTATAPHSEGPLPTEPLPAA MATTSSYSEGHPQGEAVPTILLTKPTATTSRPTTAPTRATTRRPPRPPGSSRKGANSSSR SVLPAPSGHSGRKEGQRGRNQSSTHLGQKRPLGKIFQIYKGNFTGSVEPDPSTLTSRNPL WGYSSLPQPQTVATTMAPSRTSWAPPTNPLVPTEDKPGLSRAGQGDGSTFTSQGGELDTT VASGAPASPQPAPVPSQHPRGDPQDGPSHSDSWLTVTPGINRPPSTSSGVSTATAGPTQA AFNASVSAPSKGTPQGTSSTSQAPSHPTGGSESTISQAKEEATATPTMTNRVPSPLSTVV STATGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRATICLSKMDIAWVILAISVPISS CSVLLTVCCLRRKKKTANPENNLSYWNNAITMDYFNKHAVELPREIQSLETSEDQLSEPR SPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | SVVTLTPHPDGPSSQATAPMAMTTPHPDGHPPTNTISTITVTATAPHSEGPLPTEPLPAAMATTSSYSEGHPQGEAVPTILLTKPTATTSRPTTAPTRATTRRPPRPPGSSRKGANSSSRSVLPAPSGHSGRKEGQRGRNQSSTHLGQKRPLGKIFQIYKGNFTGSVEPDPSTLTSRNPLWGYSSLPQPQTVATTMAPSRTSWAPPTNPLVPTEDKPGLSRAGQGDGSTFTSQGGELDTTVASGAPASPQPAPVPSQHPRGDPQDGPSHSDSWLTVTPGINRPPSTSSGVSTATAGPTQAAFNASVSAPSKGTPQGTSSTSQAPSHPTGGSESTISQAKEEATATPTMTNRVPSPLSTVVSTATGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRATICLSKMDIAWVILAISVPISSCSVLLTVCCLRRKKKTANPENNLSYWNNAITMDYFNKHAVELPREIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI | |||||||||||||||||||
1 | 5jcss | 0.09 | 0.09 | 3.31 | 1.28 | SPARKS-K | STVRINEDHQKDSSNKIYNLNMINVIELEEPSEEDLTHILAQILTNLIPKLIDSIYMNTKFISLNKGAHTRVVSDILFKNNGINKPDQLIQSSAGAIGEFKALSLDIASSRISLFLTQHVPENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFRLMEQISVC--IQMTEPVLKTKMLAKKLTVINVSQQTETPKTVAVPIQENFEATFSLKKNEKFHKMFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNFVESL---VKTIRAGEWDEVNLATSDLLTEPDSRSILLSEKGDAEPIKAHPDFRIFACMNPATDVGKRDIRSRFVHITDLLSIIDKYIGKYSVSDEWV--------GNDIAELYLEAKKLSDNNTI----------VDGSNQKPHFSIRTLTRTLLYVTDIIHIYGLRRSLYDGFCMSFLTLLDQKSEAILK-------PVIEKFTLGRLKNVKSI | |||||||||||||
2 | 2nbiA | 0.16 | 0.15 | 4.83 | 1.34 | MUSTER | SDLNPSSQPSECADEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPAPFECSPDNPMFTPSPDGSPPNCSPTMPTPQPSTPTVITSPAPSSQPSQCAEVPYGDSSRPLTDPAVNRPDCDVLPTPQNINCPACCAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPDSARPPDCTAGRPDCNVLPFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTG-------PQPSSQPSECADVLELCPYDTPFDDS----------------SRPPDC-----------TDPSVNRPDCDK------------------LSTAIDTCPTCCPTQCRPDNPMFSPSPDGS-----PVCSPTM-MPSPLPSPT | |||||||||||||
3 | 2cseB | 0.10 | 0.10 | 3.65 | 2.59 | Neff-PPAS | PSLSLSPNPGGVPWIAIGDETSVTSPGALRRMTSKDIDEPLVVVTEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKEIDLRVAQTLLPTNVPIGEVSCPMQSVVKLLDDQLPDDSLIRRYPKEAAVALAKRNGGIQWMDVSEGTVMNEAVNAVAASALAPSASAPPLEEKSKLTEQAMDLVTAAEPEIIASLVPVPAPVFAIPPKPADYNVRTLKIDEATWLRMIPKTMGTLFQIQVTDNTGTNIAPMRFVLDLGGPNGKKVGFIVFQSKIPFELWTAASQIGQATVVNYVQLYAEDSSFTAQSIIATTSLAYNYEPEQLNKTDPEMNYYLLATFIDS-AAITPTNMTQPDVWD----ALLTMSPLSAGEVTVKGAVVSEVVPAETPESLNASLPNDAAR-CMIDRASKIAEAIKIDDDAGPDEYSPNSVP----------IQGQLAISQLETGYGVRIFN | |||||||||||||
4 | 2nbiA | 0.15 | 0.13 | 4.35 | 2.62 | PROSPECTOR2 | QPSDLNPSSQPSECADVLEECPLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDFPNNLGCPACCPFECSPDNPMFTPSPDGS-----PPNCSPTMLPTPQPSTPTITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPLPTPQNINCPACCAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPSARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTG-------PQPSSQPSECADVLELCPYDTDSSRPPDCTDP----------SVNRPDC------------DKLSTAIDF-------------------------TCPTCCPTQCRPDNPMFSPSPDGS----PPVCSPTMMPSPLPSPTE | |||||||||||||
5 | 5kcs1w | 0.11 | 0.10 | 3.58 | 1.25 | SPARKS-K | GAILLISAKDGVQAQHALRKMGIPTIFNGIDLSTVYQDIEIVIKQKVELYPNVCVTNFTESEQWDTVIEGN---DDLLEKYMSGKSLEALELEQEESIQNCSLFPLYHGSAKSNIGIDNVITNKFYSSTHRGPSELCGNVFKIEYTKK---RQRLIRLYSG--VLHLRDSVRVSEKEKIKVTEMYTSINELCKIDRAYSGEIVILQNE--------------FLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQLDALLEISDSD------PLLRYYVDSTTHEIILSFGKVQYHVEIEITEPTVIYMERPLKNAEYTIHIEVPPNPGLSVSPLPLGSGMQYESSVSLYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGSTPADFRMLAPIVLEQVYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKN--------------NEVIEIPRCIQEYRSFFTNLTELKHVTTGEPVCQP------------RRPNSRIDKV | |||||||||||||
6 | 1zvoC | 0.10 | 0.09 | 3.18 | 1.34 | MUSTER | -RLQLQE----SGPGLVKPSETLS-IVSGGPIRRTGYYWGPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMSRGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPK-DNSPVVLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFVVGSDLKDA---HLTKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSTLNHPSLPPQRLMALREP--------------AAQAPVKLSLNLLASSDPPEAASWLL-----------------CEV----------SGFSPPNILLMLEDQ------------EVN------TSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPTCVVSHEDSRTL | |||||||||||||
7 | 2ocwA | 0.10 | 0.10 | 3.65 | 2.55 | Neff-PPAS | --YPPTSVNRHTCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGET----LKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLV--------SLTLNLVTRAD-----EGWYWCGVKQGHFYGETAAVYVAVEERKAA | |||||||||||||
8 | 2nbiA1 | 0.15 | 0.11 | 3.76 | 2.22 | PROSPECTOR2 | Q---PSDLNPSSQPSECADVLEECPIDECFLPYSD-------ASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPF------PNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPS----QCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPACCAFECRPDNPMFTPSPDG---------------SPPICSPTMMPSPEPSSQPSDCGEVIEECPIDACF--------LPKSDSARPPDCTAVGRPDCNVLPFPN-NIGCPSCCPFECSPDNP---------------------------------------MFTPSPDGS-------------------------PPNCSPTMLPSPSPSAVTVPLTP---------------APSSAPTR | |||||||||||||
9 | 1zvoC | 0.10 | 0.09 | 3.23 | 1.23 | SPARKS-K | -RLQLQESGP-GLVKPSETIVSGGPIRRTRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTGNPPPYYTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLN-HPSLPPQRLMALREP--AAQAPVKLSLLLASSDPPEAASW--LLCEVPPNIWREVNTSGFAPARPPPQPGSTTF-----------WAWSVLRV----------------PAPPSPQPATY------------TCVVSHEDSRTLLNASRSLEVSYVTDHGPM-------------------------- | |||||||||||||
10 | 2rcjT | 0.15 | 0.13 | 4.51 | 1.31 | MUSTER | SVLTQPPSASGTPGQRTGTSSGSITQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAE-ASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKAT-LISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKY------AASSYLSLTPEQWKSHRSQVTHEGSTVEKTVAPTECSASTK-GPSVFPLAPS------SKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKVQVHNAKTKPREQQYNSTYRVVSVLT-------VLHQNWLDGKE-KVSN--KALPAPIEKTISKAK---------QPREPQ-------------YTLPPSREEMTK---NQVSLT--------YPSDIA--PENNYKTTPPVLDSDGSFFLYSKLTVDKSCS----VMHEALHNH | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |