Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | GGGSKYFRSSTVGEHTTIEFENLVDSDEGESSQSCPRPISEEEIGHLKELRYGAITDKQTLIDEKLTAELVAQEEKLRLEEEAICAAQREAAKLAKERKLKEQLAQRSRARVEAEGSGTHRKHRPSDGEFEVYLQSVKAQSEAFRSSRLSSETNVVTPNTESSWDFTSKTRSTNDDATSLDLEWEDEEGMNRMGPAWERSKTEEDILRAALCPGGRQLGSGPPSASEDSNALEWENDFVSAHAEDIGDHGDEEFEGFVNPVLDTPSEETEVKPITDQQDR |
1 | 3jc8Na | 0.09 | 0.07 | 2.60 | 1.22 | SPARKS-K | | ----------------------MMIRINLLPVRAVKKREMGRQVLVLFAVVLIGAGVANYLWYDDRQSELEAHQAGVASTKARIAELEKIIGEVKNINTRKAEVEKKLAVLDALRKGRSGPVRMMDA----------------------------LASATPKKVWVKTFSENNN--AVSIDGSAVSHDEVAEFMVVWTPKGMGRLVDRRRDSKTARVEMLTSDATIEEFPEAQVSPFFKNIDTAKQVGGAQVGVPILVEFKITMTSNY------------ |
2 | 2tmaA | 0.11 | 0.10 | 3.76 | 1.72 | Neff-PPAS | | -------AIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELD-KYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTK-LEKSIDDLEDELYAQKLKYKAISEELDHALN |
3 | 2mxxA | 0.08 | 0.05 | 2.09 | 1.07 | PROSPECTOR2 | | MADEA----------------TDAARNNDGAYYLQTQFTNADKVNEYLAQHDGEIRAEAAADPAVVAAKAALDAVEGGSHNYGEVKAAYEAAFNNAFNAVRNKYVQRFQATYNNATEQEGKTYIQGET-------------PEQANARYLKRVGAANNQNPAAEDKGATTPASKEEAKK----------------------------------SEAAAKNAGKAAG--------------------------------------KALPKTSAVKHHHHHH |
4 | 5yfpE | 0.09 | 0.08 | 3.04 | 1.19 | SPARKS-K | | ELSKDHRNDVLIDAN-----TKNLPTNEKDQDAIIWKQLDPKPYIRTFESTLKELKNLNEETLNKRQYFSEQVATQEVIHSENVIKLSKDLHTTLLTFDKLDDRLTNVTQVVPLGDKLETAIKKK-----QNYIQSVELIRRYNDFYSMGKSDIVEQLRLSKNWKLNLLILSSKLETS------SIPKTINTKLVIKYSEMMENELLENFNSAYRENNFTKLNNFNGGVNVIQS---FINQHDYFIFIKNVKFKEQ-----LIDFENHSVIIETSMQNLI |
5 | 5araT | 0.14 | 0.06 | 2.07 | 0.79 | FFAS-3D | | ----------------------------------------DKLNEQKIAQLEEVKQASIKQIQDAIDME--KSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYR-------------------EVKNRLDYHISVQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIADLK--------------------------------------------------------------------------------------------------- |
6 | 5lj5t | 0.14 | 0.12 | 4.01 | 0.39 | HHpred | | --------------RTI--FESLLEKDTGNDPI-TNEPLSIEEIV------PNLLTSLQNEWDAIMLENLRSTLDSLTKKLTVMYAAKLVAAQLLMEKNEDSKDLPKSSQQ---APKW-----PILKN-L--ELLQ--AQNY-SRNIKFPELNKSMDKWVCMCRCEDGALFLKD-SKTTTTTPNPRTGEHPAII--S--RGPCNRLLL-LYPGNNKEIEVDS---ANEIIYMYGHNTFIWADNRGTIEDDSYIVHKSDVEYSSGKDSLLLALYSPDG--- |
7 | 5nnvA | 0.11 | 0.09 | 3.32 | 0.97 | MUSTER | | -----------------------AKEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEA----VFETLQAEVKQLRAQVKEKQQLSNE--LTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRI--------------QHGLDTYERELKEKRLYKQKTTLL--------- |
8 | 2j68A | 0.07 | 0.03 | 1.03 | 0.51 | CNFpred | | -----------------------------------------TAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNL----------QEDVIAQLQKIEAAYSNLLAYYSHH--------------------------------------------------------------------------------------------------------------------------------- |
9 | 2pffB | 0.18 | 0.16 | 5.36 | 0.76 | HHsearch-2 | | --MDA-----YSTRPLTGSLEHVQEQFNKILPEADDEPTTPAELVGKGYVSSLVEPSKVGQFDQVLNLCLTEFEELIKNYITARIMAKRPHVLVGDLIKFSATLSELINILEWLEN-P----SNTPDKDY---LLSIPAHYVVTAKGELRSATGHSQGAETDSWESFVSVRNTSLPPSILEDSLENNEGVPS--PMLSISNLEQDYVNKTHLPAGKQVEISLVNGAKNLVNLTLRKAKAPSGLDQSRI---PFSEKFSNRFLPVPFHSHLLVPASDLINK |
10 | 5nnvA | 0.09 | 0.07 | 2.84 | 1.41 | Neff-PPAS | | ----------------------------------------------------KEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEE-AIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLALKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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