>PF15744 (359 residues) CGNFAVLVDLHILPQGSNKDTSWFSEQKKEEVCLLLKETIDSRVQEYLEVRKQHRPSNAE FTRSNPLSLKGYGFQITAYFLKRGIRLRCIRSTQNAELCVFPDRFVVCVSQLAFSRDLLA NQNEDLTERVLHGVSDYFAECAESSLPPSAKLRRNALKEIVKRTETKSSVTSKSQTRRDT VETSSDSVIAEIARRRNDGQASSSPPSESMGQAKDYIKAAESHWGLPVQKLEKVNQTQPE DTSGQQKPHPGERLKTGLLSRSPVCSCESASPCPKQSPRVAKTQQKRRNRSSAEDFDHHR RVSLGSDRLVPREIIVEKSKAVRVLPASELSDPGLLLKQDLAKTTSKEELHVLESLSSR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | CGNFAVLVDLHILPQGSNKDTSWFSEQKKEEVCLLLKETIDSRVQEYLEVRKQHRPSNAEFTRSNPLSLKGYGFQITAYFLKRGIRLRCIRSTQNAELCVFPDRFVVCVSQLAFSRDLLANQNEDLTERVLHGVSDYFAECAESSLPPSAKLRRNALKEIVKRTETKSSVTSKSQTRRDTVETSSDSVIAEIARRRNDGQASSSPPSESMGQAKDYIKAAESHWGLPVQKLEKVNQTQPEDTSGQQKPHPGERLKTGLLSRSPVCSCESASPCPKQSPRVAKTQQKRRNRSSAEDFDHHRRVSLGSDRLVPREIIVEKSKAVRVLPASELSDPGLLLKQDLAKTTSKEELHVLESLSSR | |||||||||||||||||||
1 | 3tnfB | 0.09 | 0.08 | 3.05 | 1.37 | Neff-PPAS | -------------------DSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGEEVTSLNDA------HYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQY-----------------ETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK----- | |||||||||||||
2 | 5ugqA | 0.09 | 0.08 | 3.06 | 1.22 | PROSPECTOR2 | CGDVAALALIRFPATGDKPAIWCNSDADNDRLRAEGVAHIENETKQFVGRCVDKGKNFLAHVGDDKLTYLGYSYRIGSAYAEE-----------------FPQRVLDGAVDPNADPIEAELRQAKGFQDAFNNYAADCAKNAGCPLGADPAKAVEVYHSLVDPLVDPDNPRISRPARTKDPRGLSYSDAIVGT--------IALYSPNLWQHLTDGLSELVDNRGDTLLALA------DYRRDSHGRYNNSGDARVAIN-----CVDQPPVTDRDKVIDEDRRAREIAPFSYGKFTGDAPLGTCAFWPVPPT------SQPHAVSAPGLVTHDPATPYKAGVDLANQTAYLIGGTTPPS | |||||||||||||
3 | 4btgA | 0.12 | 0.11 | 4.03 | 0.81 | SPARKS-K | AVVSSVLTILGRLPKELDPSARLRNTNGIDQLRSNLALFIA-----YQDMVKQRGRAEVIFSTIIPWFIEASEV---SPFKLRYIGQTSAIDHMGQ-----PSHVVV-YEDWQFAKEITAKLANNSNQRFEPGISDRMSATLA--PIGNTFAVSAFVKNRTAVYEVSQRGTVNSNGAEYALDRDPMVAIAALRTGIVDESLEARASNDLKRSMFNYYAAVMHYAVAHNPEVVQGV---AAEQGSNVRTELRIPVGYNAIEGGSIRTPEPLQPSEVLQAKVLDLANHTTSHEASTEFAYEDAYSVTIRNKVKEFELLGLGQRRERVRILKPTVAHAIIQMWYSFVEDDRTLAAARRTSRD | |||||||||||||
4 | 6decM | 0.10 | 0.07 | 2.67 | 0.56 | FFAS-3D | ----------------ADLARSWALYEDEGVIRCYLEELLHESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAIISTLVSSVLPVELARTQDHQKLCYSALILAMVFSMGEAVP----------YAHYEHLGTPFAQNIVEDGLPTTEQLPDLCVNLLLALNLHLPAADQNAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLTDMMALIDITVRHIADLSPGDKRTTPYLQHRHRLPDLQAIL---------RRILNEEETSPQCQMDRMIVREMCKE------------------------------------------------------------------ | |||||||||||||
5 | 4zgnA | 0.21 | 0.09 | 3.02 | 0.43 | HHpred | ---GAVVPKLN---WSTPKDALWITTTTAEEVLLLLKS--SDFVAHDLNHAFDDCKDDNA-------DPKDFSFELV---LKEWFPM-----HASTEFRCFVSKRLIAFCQRDDN--YY----EFLK-----------------------ENIDCYEKLISDLLKK-LD---TFPDPDFVFDVYIHK-----DRAW---LIDINPFYPRTDGL---L----FSWS----ELESMNSEKPE----------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 3j3iA | 0.09 | 0.09 | 3.48 | 0.92 | MUSTER | IGLFDATPQMRIFSEMDTADYADMLHLTIFEGLWLVQDAISFLVNGEKLLSADRAGYDVLVEELTLANIRIEHHKMTGAFTTRWVAAKRDSALRLTPRSRTAHRVDM-VRECDFNPTMNLKAAGPKARLRGSGVKSRRSPPRRESTTTTDDSPRWLTREGPQLTRRVPIIDEPPAYESGRSSSPVTSSISTSQHEEEMGLFDAEELPMQQTVIATEARRRLGRGTLEEAALEGQVAQGEVTAEKNRRIEAMLSARDPQFTGREQITKMLSDGGLGVREREEWLELVDKT-VGVKGLKEVRSIDGIRRHLEEYGEREGFAVVRTLLSGNSKHVRRIQLIRESNPSAFETEASRMRRLRAD | |||||||||||||
7 | 5jrwA | 0.09 | 0.04 | 1.36 | 0.73 | CNFpred | ---TPTWINITGIH----------RTDVVQRVGEFFG-IHPLVLERILNVHQ-----------RPKVEFFENYVFIVLKMFTYDHELESEQ----VSLILTKNCVLMFQEKI-------GDVFDPVRERIRYNRGIIRKK-------RADYLLYSLIDALVDDYFVL------------------------------------------LEKIDDEIDVLEEEV--------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 4f0pA | 0.17 | 0.14 | 4.49 | 0.46 | HHsearch-2 | DRRALIA--IRSSPWKGHETNPWFGDHKPSTGNRLLLEAARL----------HAGTTREERLLAPPLFLFRAVVHRGRAVVKGHVEFCAII--ERLEHVVQPLSLDLAVVSGGEVDFRWIDAAESWIRWVRQGRL-AIPGIRRRQQPASGSAEAATLQTLYKFYDGRKHVAAERESGRWLSRSSGGGVDF-IGRIDMG-SLKASTPVVVLGQAKCIQPT--S----S------VS---PEQ---------VARVVARLRRGYVTTGSFS-----RQAQVEI-----------IDD-QYPVVLIAGGTLA---ATVRRMANGGDLDALLASTVD----EYGAVTHRRPEEVISL------ | |||||||||||||
9 | 3txaA1 | 0.10 | 0.09 | 3.49 | 1.23 | Neff-PPAS | -LDVVVLLDNS----NSMNNERANNSQRALKAGEAVEKLIDKITS-------------NKDNRASTIFDGTEATVSKGVADQNGKALNDSVSWDYHKTTFTATTHNYSYLNLTNDANEVNILKSRIPKEAEHINGDRTLYQFGATF------TQKALMKANEILETQSSNARAINFNPYISTSYQNQFNSFLNKIPDRSGILQEDFIINGDDYQIVKGDGESFKLFDRKVPVTGGTTQAAYRVPQNQLSVMSNEGYAINSGYIYLYWRDYNWVYPFDPKTKKVSATKQIKTHGEPTTLYFNGNIRPKGGVNGDPGATPLEAEKFMQSIS-SKTENYTNVDDTNKIYDELNKYFKTIVEE | |||||||||||||
10 | 2xv9A1 | 0.15 | 0.03 | 0.84 | 0.42 | HHsearch | -GSP--EFHHFTLESSLDTHLKWLSQEQKDELLKMKKKELEAKILHYYDELEGDAKKATEHL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |