Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | HPIYVRRDPSIPTYGLRQSILLNSRLQDCYVDSPTLTNIWTARTCAKQNSNAPAPGTTSSWEVVKNPFIASSLSLVKLVLRRQLKDKCCPVPCKFGEAKPSKGLKPKDDSAMKATRRGRIRNSIRSKSKQPVGQQLGSPRRRRPAGGISESKESSKEKKVTVSQDLENRYAEHVAATQALRRDIGTAAWKGQALLPEARKRQQLSDMLTIHGLPTEGYRALYHAVVEPMLWNPSGTPKRYSLELGKAIKQKLWEALCSQAATPXGAQK |
1 | 2pffB | 0.22 | 0.20 | 6.24 | 1.39 | HHsearch-2 | | ----------MDAYSTRPLTLSHGSLEHVLLVP---TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA--ELVGKFLG---YVSSLVEPSKVGQFDQAKLLQENDTTLVKTKE--LIKNYITIMAKRPFDKKSNSALRAVGEGTDDYFEELRQTYHVLV-GDLIKFSAETLDAEKVFTQGLNILEWLEN---PSNTP---DKDYLLIISCPLIGVIQLAHYVVTAYLKGATGHSQSFFVSVRKAITVLFFIGVRCYEAYPNTSLP |
2 | 2tmaA | 0.10 | 0.09 | 3.33 | 1.14 | Neff-PPAS | | ---------------------IKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKS-LEAQAEKYSQKEDKYEEEI-KVLSDKLKEAETRAEFAERSVTK |
3 | 2pffB | 0.20 | 0.16 | 5.15 | 1.10 | HHsearch | | ----------MDAYSTRPLTLSHGSLEHVLLVP---TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA--ELVGKFLGY---VSSLVEPSKVGQFDQVLCLTEFENCYLE---GNDIHALAA-KL----LQE--------NDTTLVKTKELI-------KNYITAR----IMAKRPFDKKSNSALFRA---VGEGNAQQNTDDYFTYHKFSAETLSELIRTTILEWLENPSNTPKDYLLSIPISCPLIGVIQLAHYVVTAKLAT- |
4 | 3j3iA | 0.13 | 0.12 | 4.29 | 0.91 | SPARKS-K | | ANIRI-EHHKMPTGAFTTRWVLTPRVRECDFNPTMNLKAAGPKARLSGVKSRRRVSEVPLAHVFRSPPRRESTTTTDDSPRWLTREGPQLTRRVPIIDEPPAYESGRSSSPVTSSISEGTSQHEEEMGLFDAEVIATEARRRLGRGTLERIQEAAGEVTAEKNRRIE--AMLSARDPQFTGREQITKMLSDGGLGVREREEWLELVD------KTVGVKGLKEVRIDGIREGFAVVRTLLSSKHVRRINQLIRESNPSAFETEASRM- |
5 | 1lxlA | 0.16 | 0.11 | 3.62 | 0.51 | FFAS-3D | | ----------------------------------------------------------------------SNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESE---------METPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDE---FELRYRRAFSDLTSQLHITPGTAYQSEQVVNELFRDGVNWGRIVAFFALCVESVDKEMQVLVSRIAAWMATYLNDHLWDTFVELYGNNAAAES |
6 | 2pffB | 0.21 | 0.18 | 5.71 | 0.44 | HHpred | | ----------MDAYSTRPLTLSHGSLEHVLLVP---TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA--ELVGKFLGY---VSSLVEPSKVGQFDQAKLLQENDTTLVKTLIKNYITARI--MAKRPFDKKSNSALFR-------AVGEGNAQLVAIYFEELRDLYQYHVDAEKVFTQGLNILEWLEN------PSNTPDKDYLLIISCPLIGVIQLAHYVVTAYLKGATGHSQSFFVSVRKAITVLFFIGVRCYEAYPNTS-- |
7 | 1kanA | 0.13 | 0.11 | 3.90 | 0.77 | MUSTER | | GPIIMTREE---RMKIVHEIK--ERILD--KYGDDVKAIGLGRQTDGPYMSTEEAEFSHEWTTGEWKVEVNFYSE---ILLDYASQVESDWPLTHGQFFSILPIYDSGGYLEKVYQTAKSVEAQKFHDAICALIVEELFEYAGKWRNIRVQGPTT--------------FLPSLTVQVAMAGAMLIGLHHRICYTTS---ASVLTEAVKQSDLP-SGYDHLCQFV---MSGQLSDSEKLLSLE---NFWNGIQEWTERHGYIVDVSKR |
8 | 2pffB | 0.23 | 0.21 | 6.57 | 0.68 | HHsearch-2 | | EPTTPAVEPSKVGQFDQVLNLCLTEFENCYLEGELIKNYITARIMAKRPF--DKKSNSALFRAVGNATDDYFEELRDLY---QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLGFTPGELRSYLKGATGHSQGLVT----AVAIAETDSWESFFVSYEANTSLPPSILEGVPSPMLSISNLTQEQVQDYVNKQVEISLVNGAGPPSLYGLNL------TLR-----KAKAPSGLDQ |
9 | 1dgiR | 0.13 | 0.12 | 4.18 | 0.98 | Neff-PPAS | | ------QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNKVEHESFEKPQLLTVNLPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQ-------LLIRPVDKPINTT |
10 | 6etzA4 | 0.16 | 0.05 | 1.74 | 0.51 | HHsearch | | ---------------------PAAGIDDVFVH-----------------------------------------------------------------------------------------AGY---------------------------DHITGEGILKVEASRGGQA----IDAVVR--V------------PE--------LA--L-E---LAA-GTEVRVPAVEPWSA-EVPKLYEAAVSAAG---------ESVALQIGFR- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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