Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | MRFFLSGELEGDIAEEFINIISEIGSDLEKLNSNNYGSEVEEIAIIPIVVNITPEYEDAGFHKERKLFKRKSKEADFRLRIDYEAFLSADYATREILIIENIIQSIRLLGEKATSDFNAIKLEQDI |
1 | 4o6mA1 | 0.18 | 0.15 | 4.92 | 0.77 | SPARKS-K | | MR--LAYVKNHEIYGEKLTLRERIEKTLQRFDELSLEEA-EDYLIIPVLILE-----RDLLLEGRKILVSDGFTVGYFFGGDFRTVFDGN-----------LQSSIEKYLSLKLSNDNLKTAEKLL |
2 | 1n3gA | 0.15 | 0.12 | 3.99 | 0.69 | FFAS-3D | | MTMNITSK----QMEITPAIRQHVADRLAKL--EKWQTHLINPHI---------------------ILSKEPQGFVADATINTPNGVHEDMYTAINELINKLERQLNKLQHKGEARRAATSV-KDA |
3 | 4z7kB | 0.12 | 0.10 | 3.66 | 0.20 | HHpred | | MDLEYMHISNILLNM---RDGSKLRGYAKKYIDYKYPKIIDR-SPLIIGIG--SRIFFEKETEDMDHFGTTDKILKYQFKLNSEIYKNSDEIDREEFLKRVLIGNILSMKSLGIEE---------- |
4 | 5cw9A | 0.12 | 0.11 | 3.94 | 0.70 | MUSTER | | MEMDIRFRGDDP--EAYYKALREMIRQARKF------AGTVTVTLIIRFRGDDLEIRQARKFAGTVTYTLDGNDLEIRITGVPPQVILELVKEAIRLAKEFLVIRITGVPEQVRKELEAERLAKEF |
5 | 2vawA | 0.11 | 0.10 | 3.47 | 0.71 | CNFpred | | DMVFITTGMGGGTGTGAAPIIAEVAKEM----------GILTVAVVTRPFPFEGRKRMQIADEGIRALAE---SVDSLITIPNEKLLTAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVM |
6 | 2pffB | 0.16 | 0.14 | 4.77 | 0.78 | HHsearch-2 | | MDLYKTSKAAQDVWNRADNHFKDLDIVNNPVNL----------TIHFGGEKIRENYS-AMIFETIVDGKKTEKIFTSYTFRSEKGLLSATTQPALTLMEKAAFEDLKSKLIPADATFEYAALASDV |
7 | 2mq8A | 0.11 | 0.09 | 3.13 | 0.71 | Neff-PPAS | | LTVEVEVKITADDENKAEEIVKRVIDEVEREVQKQYPN-----------------------ATITRTLTRDDGTVELRIKVKADT------EEKAKSIIKLIEERIEEELRKRDPNATITRTVRTE |
8 | 5v3wA1 | 0.12 | 0.06 | 2.22 | 0.46 | HHsearch | | -------------------------------------------------TK--EEIR--KRWD---RYAFAEKTFNVTIAIPYEQLEELDDEGQVRFVLDAVSQSG-----VQIPAHQRTSYLDN- |
9 | 4k12B | 0.02 | 0.02 | 1.08 | 0.64 | SP3 | | --------MDSERDKARKEVEEYVKKIVGESYAK------------------STKKRHTITVALVNELNNIKNEY-------LNKIVESTSESELQILMMESRSKVDEAVSKFEK----------- |
10 | 5cw9A | 0.10 | 0.10 | 3.51 | 0.53 | PROSPECTOR2 | | MEMDIRFR-GDDPEAYYKALREMIRQARK-------FAGTVTVTLIIRFRGDDLEIRQARKFAGTVTYTLDGNDLEIRITGVPPQVILELVKEAIRLAKEQVRKELAKEAERLAKEFNITTYTIRL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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