Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | MSEKPEDPRDPMPSERKSMWRTAEERRMSDLTRVLEWLARRQGKKHQGLQKHKPKMATPFKARGKEEKKGKSVPKPQGGNRQVSFSDQATGQSTKKENSARYRRPYGAEPKGKRLSTVPGNYTRDSARKSDLDIKDAIALESTQRSMPYRRQSITEPTLPDTIFGQRRSTLLRDWVVKAPDSSYERKLKSLMEKGTEPKIEMVKMLKPEEVLSCRYLRLSKNNIRTLLKLCKDAGMNVDIHPHMVEGEIDAKMVFSQNRNVA |
1 | 5cqcA1 | 0.12 | 0.11 | 3.76 | 1.03 | SPARKS-K | | -----------SIYPPETSWEVNKGMNSSRLHKLYSLFFD---KSSAFYLGDD--VSVLLTGAYGFQSKKNDQQRPDSDY--VAGYHVDAKSDAGWVNDKLDRRLSSKATQPATFILPFVEMPTDITKGVQHQVLLTISYDPKSKQ---LTPTVYDSIGRDTY-SESLSSYFKGKYRTTCDEILTQSIEKAIKSNTEGNCGSYTFRTIKEVISSSAQYLTSQHVQDIESCIKYRNLGVDIESALTEGKTLP----------- |
2 | 2tmaA | 0.07 | 0.06 | 2.75 | 1.99 | Neff-PPAS | | AEQAEADKKAAEDRSKQLEDELVSQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYQKLKYKAISEELDHALNDMTSI- |
3 | 5jcss | 0.10 | 0.09 | 3.44 | 0.99 | SPARKS-K | | ATFSLKKNEKFHKMLHRCFNKNQWKNVVKLW---------NEAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDEAQSSSIENSFVFNFVELVKTIRAGEWLNLATASDLLTEPDSRSILLSEKGDAEPIKAHPDFRIFACMNPAKRDLPIRSRFTEIVHSPERDITDLLIDKYIGKYSVSDEWVGNDIAELYLEAKKLSDNNTIVDGSNIRTLTRTLLYVT-DIIHIYGLRRSLYDGFCMFLTLLDQK |
4 | 3j65r | 0.14 | 0.12 | 4.06 | 0.58 | FFAS-3D | | MSSTQDSKAQTLNSNPEIL---LRKRRNADRTRIERQELAKKKREEQIKKKRSNKNK---------FVRAESIVAKTLATSREKERIKRVSILEDKKAKNETQHIASGKDFILKITEKANGAEENSVDLEE---------TEEEEDDGLIREKTTYDGKPALLFIVRVRGP-----LAVNIPNKAFKILSLLRKLTKNVYPLLKVIAP-------YVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHLNDNNIVEEQLG-- |
5 | 3eukH | 0.20 | 0.15 | 4.88 | 0.46 | HHpred | | -----KSLRDLLPENSGDMEAGSISAESV-ANILRKTIQREQNRILQLNQGGQVKGVLVVNIRDTHSILLNALSDQHEQHQKLSFSEALA---------MLYKRINPPQTIGEELLDYR-NYL---------------DLEVELRG--------AYGWMRASALSTGMSMVVQSWE------------------------EESRRMRAKDILPCRLLRLDAMSINTLFELCERLDMQLLIAAPENISEKLVRKILANQEYV- |
6 | 1kanA | 0.11 | 0.10 | 3.56 | 0.79 | MUSTER | | -------MNGPIIMTREERMKIVHE--------IKERILDKYGDD-LGRQTDGPYVMSTEEAEFSHEWTTGEWKNFYSEEILLDYASQVESDWPLTHGQFFSILPYDSGGYLEKVYQTAKSVEAQKFHDAICALIVEELFEYAGKWRNIRVQGPTTFLPSLTVQVAMAGAMLIGLHHRICYTTSASVLTEAVKQSDLPS-GYDHLCQ---FVMSGQLSDSEKLLESLENFWN--GIQEWTERHGYI--------VDVSKRIP |
7 | 4osvA | 0.22 | 0.07 | 2.17 | 0.52 | CNFpred | | ------------------------KQALETVQRLLPVLCQAH----------------------------------------------------------------------------------------GLTPEQVVAIASN---------------------GGGKQALE----------TVQRLLPVLCQAH---------GLTPEQVVAIASHDGGKQALETVQRLLPVL---------------------------- |
8 | 2pffB | 0.20 | 0.19 | 6.12 | 0.47 | HHsearch-2 | | ASQLQENKILPEPTEADDEPTTPAESKVGQFDQVLNLCLTEFENCYALAAKLLQENDTTLVK-TKELIKSNSALRVGEGNAQAIFGGQGNTDDYFEELRDLYQT-YHVLV-GDLIKFSLSELIRTTLDAEKLNILEWLENPSNPDKDYLLRSYLSQGLADSSFFVSVRKAIVEAYPTSLPPSILEDSLE--NNEGVPSPMLSISNLTQEQVQTNSHLPAGKNLVQSLYGLNLTLPSGLQSRIPFSER----KLKFSNRLPVA |
9 | 2bsgA | 0.09 | 0.08 | 3.24 | 1.15 | Neff-PPAS | | --KNIGILKTSLETANSDIKTIQINKKISDLKTLTSEHTEILNGTNNTVDSILADIIRNDLLWIKRELMKHRIINNTDVITSQGIRLSLTIEVGNLREELVYSRLNEIDTKQTTVESDISAIKTSISIITSVNTNT-DNIASINLEIKQRLTVIETSIIKGQIKDNTTSILRANVSWLNQIVSLLNRVSTIETSVSGLNNAVQNLQTVEERGLTNSIKANETNIASVT----QEVNTAKGNISSLQGDVQALQEAGYIPEAP |
10 | 2vmfB4 | 0.10 | 0.03 | 1.14 | 0.44 | HHsearch | | ----------------------------------------------------------------------------------------------------------------RTI---------------RV----------VNE--------KDKDGESFYFEVNGIPMFAKG----------------------------AN-YIPQ---DALLPNVTTERYQTLFRDMKEANMNMLANWGRPESGKPFE-SLDTLPRF- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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