Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | DYNDAELHAMSYSELRNQDFDFDPQTAALQQPSLPPTGGSIQERLEHYKSKGTLDQHQFFTQISIEEWDEAGDWFLEQFGTVMQRLREARRTKRRLVQQYEEEIAAREEAVRGKIENIGRTLEELKKEGQTMM |
1 | 1wn0C | 0.13 | 0.13 | 4.42 | 0.83 | SPARKS-K | | -ALREQLNALLSSMFASGLVDEQFQQMLQEDGG---TPGFVAEVVTLFCDDADRIISELAALLDFDKVDAYVHQLKGSSASVAQKVKFTCMQFRQLCQKNRDGCIMALAVVRNEFYDLRNKFQTMLQLEQQIQ |
2 | 4wheA | 0.12 | 0.10 | 3.47 | 0.86 | FFAS-3D | | --DPQKLVRLMIQEMEDT-------------------LVEVRSTSARALAEKKQLTRRIEQASREVEWQEKAELALLKEEDLARAALIEKQKLTDLIKSLEHEVTLVDDTLKKEIGELENKLSETRARQQAL- |
3 | 5u0pG | 0.14 | 0.14 | 4.63 | 0.30 | HHpred | | LFTRENIEK--VISNMEKKSLAKLFKKPSCLTSLDEA-NAIVRRAYELRFLSRSLMLNFLELLGIEQFPSKVENIRVLLLNLHHLINDYRQSRESLIMLLEKQLKHEESQVRTHNRQMTETLEKYKSLDFNME |
4 | 4tqlA | 0.15 | 0.14 | 4.80 | 0.75 | MUSTER | | QKAIELMRKI-FQEVKQE------KAIEEMKKLYDEAKKKIEQMIQQIKQGGDKQKMEELLKRAKEEMKKVKDKMEKLLEKLKQIMQEAKQKMEKLLKQLKEEMKKMKEKMEKLLKEMKQRMEEVKKK-DELL |
5 | 4iloA | 0.11 | 0.10 | 3.53 | 0.56 | CNFpred | | --IRRKVEEKEMEKLKDQ------------IKGGEKRIQEISDQINKLENKKMDEFNALTQEMAANKERRTLEHQLSDLMDKQAGSEDLLISLKESLSSTENSSSAIEEEIRENIRKINEEGRSLLSQRTQLK |
6 | 6gmhQ | 0.16 | 0.15 | 5.02 | 0.40 | HHsearch-2 | | QYNTEVVLCKQTL-LKA--RHVAPSDTVLMFNVLKDEKSNLKEVLNAVKEL--ELAHRYFSYLSKTEARQCSD-LLSQAQYHVARARKEEELRAKQEQEKELLRQKLLKEQEEEQKKLLEQRAQYVEKTKNIL |
7 | 5xuaA | 0.12 | 0.11 | 4.02 | 0.87 | Neff-PPAS | | -MQEPLTKERLISDWNSNVSVAVARTTAIAKSSDASLVQFLAADAAATTKSTANVLKQIEPLITQPAEREILDKIMQVRKTYIASRDKVSQLKADG--MAEEAESTLINSYVPAAQGYLKLLGELLNLQRASL |
8 | 5u0pG | 0.13 | 0.13 | 4.42 | 0.46 | HHsearch | | LFTRENIEK--VISNMEKKSLAKLFKKPSCLTGLDEA-NAIVRRAYELRFLSRSLMLNFLELLGIEQFPSKVENIRVLLLNLHHLINDYRQSRESLIMLLEKQLKHEESQVRTHNRQMTETLEKYKSLDFNM- |
9 | 5cwmA1 | 0.12 | 0.11 | 3.69 | 0.65 | SP3 | | --DPEDELKRVEKLVKE-----------AEELLRQAKEKGSEEDLEKALRTAEEAAREAKKV--LEQAEKEGD--PEVALRAVELVVRVAELLLRIAKESSEEALERALRVAEEAARLAKRVLELAEKQG--- |
10 | 6eunA | 0.09 | 0.08 | 3.19 | 0.69 | PROSPECTOR2 | | DDVKKAATVAIAAAYNNGGFKAGEDATAADVEADDFKGLGLKKVVTNLTKTVNENKQN------VDAKVKAAESEIEKLTTKLADTDAALADTDAALDATTNALNKLGENITTFAEETKTNIVKIDEKLEAAH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|