Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | NLIPSKEFFFFGTEAVEPKALSHYLKSEKSAETAHSNIAWASETGKGLLFVGDKKNPSSVISLADATEPEIDGSHKFHLTSKGNKHTFKASSAAERDNWVAQLKLK |
1 | 3tfmA2 | 0.11 | 0.09 | 3.37 | 2.06 | SPARKS-K | | ------------------PYFHSFLYMN-GGLMNSWKRRWCVLKDETFLWFANPQNAVGTLDVGLIDSVCADRPNSFVIITANRVLHCNADTPEEMHHWITLLQRS |
2 | 3nsuA | 0.19 | 0.15 | 4.86 | 1.53 | FFAS-3D | | ---------------------SGFLE-RRSKFLKSYSKGYYVLTPNFLHEFKTADRPVMSLALSECTVTEHSRKNSKFVLHAKHNWVFKADSYESMMSWFDNLKI- |
3 | 3tfmA | 0.10 | 0.09 | 3.54 | 1.57 | HHpred | | -NSWKRRWCVLKDETFQEALKQGWLHNNGGGSRRNWKKRWFVLRQSKLMYFENDEKLKGTVEVRSAKEIIDNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQV |
4 | 2codA | 0.18 | 0.16 | 5.23 | 1.64 | MUSTER | | -----------GSSGSSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKESKGIIPLSAISTVRVQGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNA |
5 | 3tfmA | 0.11 | 0.10 | 3.73 | 1.88 | CNFpred | | -----ETFLWFRSKQ--EALKQGWLHNNGG-SRRNWKKRWFVLRQSKLMYFENDSELKGTVEVRSAKEIIDNTENGIDIIMADRTFHLIAESPEDASQWFSVLSQV |
6 | 3tfmA | 0.09 | 0.09 | 3.55 | 0.79 | HHsearch-2 | | MNSWKRRWCVLKDETFQEALKQGWLHNNGGGSRRNWKKRWFVLRQSKLMYFENDEKLKGTVEVRSAKEIIDNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQV |
7 | 4gzuA3 | 0.17 | 0.14 | 4.67 | 2.24 | Neff-PPAS | | ------------DHSAAVENQLSGYLLRK----NGWQKLWVVFTNFCLFFYKTHQDPLASLPLLGYSVSLPRKDYVFKLQFKSHVYFFRAESKYTFERWMDVIKRA |
8 | 2d9zA | 0.10 | 0.08 | 3.17 | 1.24 | HHsearch | | -----------GSSGSSGMVKEGWMVHYTS-RDNLRKRHYWRLDSKCLTLFQNESKYYKEIPLSEILRISSSNPHCFEIITDTMVYFVGENNGDVAQSWEKAIRQ- |
9 | 2codA | 0.17 | 0.15 | 4.97 | 1.07 | PROSPECTOR2 | | -----------GSSGSSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYEKEMYSKGIIPLSAISTVRVQGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNG |
10 | 1v5pA | 0.13 | 0.11 | 3.92 | 1.04 | SAM | | ------------PYVDRQNRICGFLDIEDNENSGKFLRRYFILDTNCLLWYMDNNGAVGSLQLTYISKVSIATPFCFVINALSQRYFLQANDQKDLKDWVEALN-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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