>PF15373 (439 residues) LFPTDPRWDREERVSEARRAFPPPSTPPWELLQAQARERTLAMRASNLHLHEDAHAGIGL SNARAAYGWPDLPARARERIRGARLIFDRDSLPPGDRDKLRIPPTTHQALFPPHDARPQP RAPSRHLGGPNTLKWDYTRQDGTSYQRQFQALPGPPALMCKRASSRVELGDCKISYGSMC SEQKQAYKPQGLPEDRYDKAQAAAHIHYVNIRPGDGLFHNRTTKAEHFYAREPEPFVLHH DQTPESHILKGNWCPGPGSLETFMQYFYGQPPPATQPPSRHVPHEKLQSHVILGEPKLLK RFFKTTMGSDYCPSEWRQVQKAPNLHLQQSNLPQGTGEFDFLTMNQKMLKPHGTAPALVT EEMLQRCKYSHMEPPLGGLRFFSTQYKDEFPFKYQGPAALRLKNPQEGFVPLGTPHQHGC REKTDPRAPQPPMYPCPSQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LFPTDPRWDREERVSEARRAFPPPSTPPWELLQAQARERTLAMRASNLHLHEDAHAGIGLSNARAAYGWPDLPARARERIRGARLIFDRDSLPPGDRDKLRIPPTTHQALFPPHDARPQPRAPSRHLGGPNTLKWDYTRQDGTSYQRQFQALPGPPALMCKRASSRVELGDCKISYGSMCSEQKQAYKPQGLPEDRYDKAQAAAHIHYVNIRPGDGLFHNRTTKAEHFYAREPEPFVLHHDQTPESHILKGNWCPGPGSLETFMQYFYGQPPPATQPPSRHVPHEKLQSHVILGEPKLLKRFFKTTMGSDYCPSEWRQVQKAPNLHLQQSNLPQGTGEFDFLTMNQKMLKPHGTAPALVTEEMLQRCKYSHMEPPLGGLRFFSTQYKDEFPFKYQGPAALRLKNPQEGFVPLGTPHQHGCREKTDPRAPQPPMYPCPSQ | |||||||||||||||||||
1 | 5jcss | 0.08 | 0.08 | 3.15 | 2.12 | SPARKS-K | VIELEEP-SEEDLTHILAQKFPILTNLIPKLIDSYKNVKSIMNTKFISLNKGAHTRVVFKNNGINKPDQLIQSSVYDSIFSEAADCFAGAIGEFKALESLDIASSRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFAFTNHSLSVCIQMTEPVLLVGEKMLAKKLTVSQQTETYKPKTVAVPIQEFSLKKNEKFHKMLHRCFNKNQWKNYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNFVESDLLTEPDSEKGDAEPIKAHPDFRCMNPATDVGKRDLPMRFTEIYVHSPERDIIDKYIGKYSVSDEWVGAKKLSDNNTIVDGSNQKPHFS--IRTLTRTLLYVTDIIHIYGLRRSLYDGFCMSFLTLDQKSEAIRLKNVKSIMSYIITPFV | |||||||||||||
2 | 1zvoC | 0.06 | 0.06 | 2.50 | 1.31 | MUSTER | RQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMSAARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVV-TGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPAT-TRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASW--EVSGFSPPNILLM------LEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPAT--DSRTLLNASRSLEYVTDHGPM------ | |||||||||||||
3 | 2pffB | 0.09 | 0.08 | 2.99 | 1.38 | HHsearch-2 | ---MD-AYSTTLSHGSLEHVLLVPTASFFIA-SQLQEQFNKILPEPTEGFAADD---EPTTPAGLGYVSSLVEPSKVGQ-FDQVLNLAKLLQENDTTLKTKELIKNYITARMARPFD---KKSNSALFRAGNAQLVAIFDYFEELRDLYQTYHVLVGDLIRTTLEVFTQGLNILEWLNPSNTPDKDYLSIPISPLHYVVAKL-LGFTPSYLKGATHSQGLVTAVAIAETDSWESFFVSCYEAYPNTSLPP-----------SILEDSLENN-------EGVPSPMLSISNLTQEQV----QDYVNKTNSHLPAGKQVEVNGAKPSGLDQSRIPFSERKLKFSNRFLSPFHSHLLVP--ASDLINKDLVKNNVS------FNAKDIQIPVYDTFDGSDLRVLSDCIIRLPVKWETTTQFKATHRVI-VAGTLDINPDDDY | |||||||||||||
4 | 3cnfT | 0.09 | 0.07 | 2.78 | 3.21 | Neff-PPAS | ----------------------------------------------------MWHYTSINNDTRVALDPKPNQIRTITSHTLRLLGPFQYFNF--------SETDRGHPLFRLPLKYPSKAIPA-----------DELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQD------AFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWDVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVVQRL---IPLSSSTYVQRLAAISRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNI---LLYPYTYIFTTAYTSMNYISNTGQGRIKHSLAVTGTTEHTIADIT- | |||||||||||||
5 | 2nbiA | 0.08 | 0.08 | 3.21 | 2.18 | PROSPECTOR2 | QPSDLNPSSQPSECADIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPACCAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDGEVIEECPIDACFLPKSDSARPPDVLPFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSECADVLELCPYDTCFLPFDDSSRPPDCTDPSVNRPDCDKLSTAIDFTCPTCCPTQCRPDNPMFSPSPDGSPPPSPLPSPTE | |||||||||||||
6 | 5kcs1w | 0.06 | 0.06 | 2.43 | 1.86 | SPARKS-K | VIKQKVELYPNVCV----TNFTESEQWDNDDLLEKYMSALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHRGPSELCIEYTKKVLHLRDSVRVSEKEKIKVTELCKIDRAYSGEIVILQNEFLKLNSVLG-----DTKLLPQ-------------RKKIENPHPLLQTTVEPSKPEQREMLLDALLEISDSPLLRYYVDSTTHEIILSFLALLQEKYHVEIEITEPTVIYMERPLKNAEYTIHIEV-----------PPNPFWASIGLSVSPL------PLGSGMQYESSVSLGYLNQSNAVMEGIRYGCEQGLYGWNVTDCKICFK--------YGLYYSPVSTPADFRMLAPIVLELKKAGTELLEPYLSPKYCANIVDTQLKNNEVILSGEIPRSVCLTELKGYHVTTGEPVCQPRRPNSR | |||||||||||||
7 | 1r70B | 0.10 | 0.10 | 3.50 | 1.28 | MUSTER | LEQSGAEVKKPASVK----KASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLDSTPQDGNLVQGFFPQEPLS-SESG-QNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVT-KHYTNPSQD----------VTVPCPVPPPPPCCHPRLSLHRPALEDLLLGSEAN--TCTLTGLRDASGATFT--TPSS-GKSAVQGPPERDLCGCYSVSSVLPGCAQPWNHGETTAAHPELKTPLTANITKSGNTFRPEVHLLPPPSEELALNELVT---LARGFSPKDVLSQELPREKYLTWASRQEPSQ-------GTTTFAVTSILRVAAEDWKKGDTEALPLAF---TQKTIDRLAGKPTHVNVSV | |||||||||||||
8 | 2pffB | 0.11 | 0.10 | 3.67 | 1.27 | HHsearch-2 | LQEQFNKIADDEPTTPAELGYVSSLVEPSKVGQLEGNDIHALAAKLL-QENDTT--LVKTKELIKNYITARIMAKRPFDKKSNSALFQLVAIF-GGQGNTDDYFEELRDLYQTYHVLELIRTAEKVFTQGNILEWLEN--PSNTPDKDYLSIPISCPQLLTPLRSYLKGATGHSQG--LVTAVADSWESFFVSV-R--KAITVLFVRCEAYPNTSLP---PSILEDSLENNEGV----PSPMLSISNLTQEQVQ-DYV-NKTNVEISLVNKNLVSGPPKAKAPSGLDQSRIPFSERK---LKFSNRFASPFHSHLLVPASDLINKDLVKNNVS-----FNAKDIQIPVYDTFDGSDGSISERIV----DCIIRLPVKWTTQFKATHILDFGPGGASGLVLRNKDGTGRVIVAGTLDINPDDDYG------------FKQ | |||||||||||||
9 | 2ocwA | 0.05 | 0.05 | 2.26 | 3.17 | Neff-PPAS | ---RQGARGGCITLISSEGYVSSKYAGRANLTNFP-ENGTFVVNIAQLSQDGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDANGDTLW---------RTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDE | |||||||||||||
10 | 2nbiA1 | 0.09 | 0.08 | 2.91 | 2.00 | PROSPECTOR2 | QPSDLNPSSQPSECAD------VLEECPIDECFL--------------PYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSD-----PARPPDCTAVGRPDCDVLPFPNNLGCPACCP------FECSPDNP------------MFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPACCAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDCTAVPDCNVLPFPNNIGCPSCCP------FECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAP--TR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |