Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | GSSSKVSFRSAQASCSGTRRQGLGRGDQNLSVMLPNGRAQTHTLGWVSGLLVLGAQVHGGCRGIEAPSVSSGSWSSATVWCLTGLGLGLSKPFLPGVIVLRDRPLESACELSYDQKKALLSLQ |
1 | 5aftV | 0.09 | 0.09 | 3.38 | 0.78 | SPARKS-K | | ----SGNKVSRQSVLCGSQNIVLNGKMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKFSKGVAFFPLHIGDEEDCVVNAAQIGSVGKNCVIGRRCVLKDCCKILDNTVLPPETVVPPFTVF |
2 | 4v2kA2 | 0.15 | 0.11 | 3.54 | 0.36 | FFAS-3D | | ----EALYQARCLACHGADGSGTLDADGRYLFPPLWGPRSFNTGAGMNRQATAAGFIKHK-----MPLGADDSLSDEEAWDVAGFVLTHPRPLF----------------------------- |
3 | 3mekA1 | 0.23 | 0.07 | 2.29 | 0.27 | HHpred | | -----------------------------------------------------------------------------EKFATANRGNGLVTPLRPGELLFRSDPLAYTVCKGSRGV------- |
4 | 3jclA | 0.11 | 0.11 | 3.83 | 0.69 | MUSTER | | FGKNQHDVVYAQQ-CFTVRSSYCPCAQPDIVSPCTTQTKPKSAFVNVGDHCEGLGVLEDNCGNADPHKGCICANNSFIGWSHDCLVNDRCQIF--ANILLNGINSGTTCSTDLQLPNTEVVTG |
5 | 1g8kA | 0.12 | 0.04 | 1.44 | 0.51 | CNFpred | | -----------------------------------------------RTMHAYEKGIIWGN------------DNYVIQSALLDLVIATHNVGRRGTGCVR---------------------- |
6 | 3qwvA1 | 0.22 | 0.19 | 5.90 | 0.49 | HHsearch-2 | | EARGGLERFCSAGKGRGLRLRPFHVGDLLFSCPAPVREFESHLDKLDSSLVVLFAQVNCNGFTIEDEELGSASCCPNVIVTYKG--T------LAEVRAVQEIHPGDEVFTSY---------- |
7 | 4v2kA2 | 0.15 | 0.11 | 3.58 | 0.76 | Neff-PPAS | | -VHGEALYQARCLACHGADGSGTLDADGRYLFPPLWGPRSFNTGAGMNRQATAAGFIKHKM-----PLGADDSLSDEEAWDVAGFVLTHPRPLFQ---------------------------- |
8 | 3mekA1 | 0.22 | 0.09 | 2.81 | 0.33 | HHsearch | | -----------------------------------------------------------------PLK--------VEKFATANRGNGLVTPLRPGELLFRSDPLAYTVCKGSRGVVCKLRL- |
9 | 2kr0A | 0.15 | 0.15 | 5.17 | 0.56 | SP3 | | GASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQ |
10 | 3cvzA2 | 0.11 | 0.11 | 3.82 | 0.49 | PROSPECTOR2 | | IITNQAAIVTKLNSLNEKTLIDIATKDTFGMVSKTQDSEGKNVAATKALKVKDVATFGLKSGGSEDTGYKVGDSTAGIAINLPSTGLEYAGKGTLKVDVTGGSTPSAVAVSGFVTKDD----T |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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