>PF15304 (350 residues) IPARPLLTKFSLITTPRRERGRPSLYVQRDMVQETQREEDHRREGLQVGRASTPDWVSED PQPGLRRALSSDSILGPAPDARAADPAPEVRKVNRIPPDAYQPYLSPGNPQLEFSAFGAF GKPSSFSTVEAKATASPKATMSPRHLSESSGKPLSTKQEPSKPPRGSLQANRGVVRWEYF RLRPLRFRAPDEPQQAQVPRGWGREVAGAPALRLQKSQSSDLLERERESVLRREREVAEE RRNALFPEVFSPTPDENCDQDSRSSSQASGITGSYSVSESPFFSPIHLHSSLAWTVEDSV DGASPGQRKKEQWYAGIDPSDGINSEVLEAIRVTRHKNAMAERWESRIYA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | IPARPLLTKFSLITTPRRERGRPSLYVQRDMVQETQREEDHRREGLQVGRASTPDWVSEDPQPGLRRALSSDSILGPAPDARAADPAPEVRKVNRIPPDAYQPYLSPGNPQLEFSAFGAFGKPSSFSTVEAKATASPKATMSPRHLSESSGKPLSTKQEPSKPPRGSLQANRGVVRWEYFRLRPLRFRAPDEPQQAQVPRGWGREVAGAPALRLQKSQSSDLLERERESVLRREREVAEERRNALFPEVFSPTPDENCDQDSRSSSQASGITGSYSVSESPFFSPIHLHSSLAWTVEDSVDGASPGQRKKEQWYAGIDPSDGINSEVLEAIRVTRHKNAMAERWESRIYA | |||||||||||||||||||
1 | 5kcs1w | 0.08 | 0.08 | 3.04 | 1.41 | SPARKS-K | IPTIFFINKIDQNGIDLST-------VYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDFYSSTHRGPSELCYTKKRQRVLHLRDSVRVSEKEKIKVTEMYTSINGELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIEN----PHPLLQTTVEPSKPEQ--REMLLDALLEISDISALLQEKYHVEIEITEPTVPLKNAEYTIHIEVPPNPFWASIGLSV-SPLPLGSGMQYESSVSLGYLNQSFQNRYGCEQGLYGWNVTDCK-ICFKYGLYYSTPADFRMLAPIVL | |||||||||||||
2 | 2atyA | 0.11 | 0.10 | 3.60 | 1.15 | MUSTER | SPPPILNGRISYYSTPIAVGTVIRYS---------------SGTFRLIGEKSLLCITKDKVDDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDACKTNFSMNGNKSMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTILTPKVTCVVVDISKDDPEVQVEVHTAQTQPREEQFNSTFRSVSELP-----MHQDWLNG-----NSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYS-KLNVQKSNWE--------AGNTFT | |||||||||||||
3 | 2bsgA | 0.06 | 0.06 | 2.59 | 2.99 | Neff-PPAS | IKNGEEILGADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQINKKDISDLKTLTSEHTEILNGTNNTVDSILADIIRNDLLWIKRELMKHRIINNTDVITSQGIRLSLTIEVGNLREELVYSRLNEIDTKQTTVESDISAIKTSISIITSVNTNTDNIA------SINLEIKQRLTVIETSIIKGQIKDNTTSILRANVSWLNQIVSLLNRVSTIETSVSGLN-----NAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLSTF | |||||||||||||
4 | 5gaoE | 0.08 | 0.07 | 2.95 | 1.76 | PROSPECTOR2 | ----------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKEAYKKLSQKFHGTKSNKK | |||||||||||||
5 | 6em5m | 0.11 | 0.11 | 3.81 | 1.36 | SPARKS-K | EPLIDWFTRHEEMPLTAVPEPKRRFVPSKNEAKRVMKIVRAIREGRIPPKKLKEMKEKEKIENYQYDLWGDSTETNDHVMHLRAKLPPPTNEESYNPPEEYLLSTEYSERERNFQKYSALRKVPGYGESSLDLYLAPRVRKNKLNIDPNSLIPELPSPKDLRPFPIRCSTHKGKVRTLSIDREVYRTTLIDDEENPDYHIENPDANNGILAIHLIVPPIFG-----------YDIENNGKTKIEDGFAQWNKPSQKQLEKDICITISCKKTVKKLSWHRKGDYFVTVQPDSLIHQVSKHLTQSPFKKSKGIIMDAKFHPFKPQ---LFVCSRYVRIYDLSQQILVKKLLP | |||||||||||||
6 | 2akhY | 0.09 | 0.08 | 2.99 | 0.64 | FFAS-3D | AKQ-PGLDFQSAKGGLGE--------LKRRLLFVIGALIVF-------RIGSFISIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAI--FASSIILFPATIASW----FGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYT----------ALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLI-- | |||||||||||||
7 | 6n1mA1 | 0.18 | 0.07 | 2.13 | 0.30 | HHpred | --------------------------------------------------------------------------------------------------------------------------------------------AKTRVETDSMGKYWGA---------------QTERSLHHFNIGKDIMPREVTHAFGIL------KKAAALELGKLPKDKADLIVQAAEEVS-------KGLLDEHFPHVW------QT--GSGTQS-------NMNANEV-----------ISN-------RAIELAGGTLGSKSPIHPNDHVNMS------------------------ | |||||||||||||
8 | 2nbiA1 | 0.13 | 0.12 | 4.25 | 1.07 | MUSTER | ---QP--SDLNPSSQPSECADVLE-------------ECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCP-------DECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPACCAFPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDCTAVGRPDCNVLPFP | |||||||||||||
9 | 5i35A | 0.20 | 0.05 | 1.64 | 0.27 | CNFpred | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HLIDVLRRELALECDYQREAACARFRDLLKGHP--------------------------FFYVPEIVCSPHVLTTELV--------------GFPLDQAEGLSQEIRNEICYNILVLCLRELFEFHFMQ | |||||||||||||
10 | 1qgaA1 | 0.10 | 0.04 | 1.57 | 0.42 | HHsearch-2 | ---------------------------------------------------------------------------------QVTTEAPA--KVV--K------HSKKQDENIVVNKFK---PKE-P--YVGRCL-------LNTKIT----------------GD---DAPG-----ETWHMVF---STEG---------EVPYR-EGQSGIVPDGIDK------------------------------------N--G--------KPHKLRLYSIASSAIGKTVSLCVKRLYTNDAG--EVVKG--VCSNFLCDLKPGSEVKITGPVGKEML-MPK------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |