Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | IDWGPTGTDSIDDDGKPEPNITLSTKVSTTTVATTTSTTTGLSQRTFTVVTTPEPKRLSTTKATGGFGETVKPPKPYGETPGLAVHQIITITVSLIMVIAALITTLVLKNCCAQSGNGRHNSHQRKIHQQEESCQNLTDFTPARVPSKVDIFTAYNDSLQCSHECVRTAVPIYTDEMIQQTPVYKTAYNGNR |
1 | 4btgA3 | 0.12 | 0.11 | 3.84 | 0.97 | SPARKS-K | | FAIGELKNQLSVGALQLPLQFTR---TFSASMTSELLWEAYVYRVGRTATYPFDANAVVSRLWSPSTPKELDPSARLRNTNG----------IDQLRSNLALF--IAYQDMVKQRGRAEVIFSDEELSSTIEAMSEVSPFKLRPINSYIGQTSAIDHMGQPSH------VVVYEDWQAKEITAFTPVKLANN |
2 | 3j0fI | 0.17 | 0.13 | 4.28 | 0.44 | FFAS-3D | | --WVFNSPDLIRHDDHTAQGLHLPFKLIPSTCMVPVAHAPNVIHGFKHISLQLDTDHLTNHEPVRVYAQESAPGDPHGWPHEIVQHYYHRHPVYTILAVASATVAMMIGVTVA----------VLCACKARRECLTPYALAPAVIPTSLALL--------C---CVRSA----------------------- |
3 | 3j0cA1 | 0.19 | 0.10 | 3.35 | 0.39 | HHpred | | ---------------------------------------------------------HATTMP----SQAGISYNTIVNRAGYAP-LP----ISITPTKIKLIPTVNLEKCCGSQEC-------TPTYRPDEQCKVFTGVYPFMDTENTQVSKAYVKSDDCLADHAEAVTTVYVNG---------------- |
4 | 2mu3A | 0.09 | 0.09 | 3.38 | 0.79 | MUSTER | | GGFGATGGASRVANALANTSTLRTVLRTGVSQQIASSVVQRAAQSLASTLGVDGNNLARFAVQAVSRLPAGSDTSAYAQAFSSALFNAGVLNASNIDTLGSRVLSALLNGVSSAAQGLGINVDSGSVQSDISSSSSFLSTSSSSASYSQASASSTSGAGYTGPSGPSTGPSGYPGPLGGGAPFGQSGFGG-- |
5 | 4zmhA | 0.18 | 0.05 | 1.70 | 0.53 | CNFpred | | ----------------------------------------------------------------------------------DAYYQLVMHPVLASATVTKMYIAQARNRLYAKQGRPIANSYGQQVKELFEKDAALT------------------------------------------------------ |
6 | 2pffB | 0.19 | 0.18 | 5.89 | 0.71 | HHsearch-2 | | ALFRAVGEGNAQLVNTDDRDLYQTYHVLKFSAETLSERTTLDAEKVFTQGLNENP---SNTP-DKDYPKLGFTPGELRSYQGLVTAVAIAFFVSVRKAITV--LFFIGVRCYEAYPNTNLTQEQVQVNQVEISGLNL-TLRKAKAPSGLDQSPFSERKLKFSNRFLPVASPFHSDLINKDLVKNNVSFNAKD |
7 | 4b03D | 0.06 | 0.05 | 2.24 | 0.93 | Neff-PPAS | | ----------------FHLTTRGGEPHMIVSKQERGKSLLFKTSAGVNMCTLIAMDLGELCEDTMTYKCPRITETEPDDVDCWCNATETWVTYGT----------------CSQTGEHRRDKRSVALAPHVGLGLETRTETWMSSEGAWKQIQKVETALGHPGFTVIALFLAHAIGTSITQKGIIFILLMLV |
8 | 2m20A | 0.13 | 0.04 | 1.44 | 0.29 | HHsearch | | -----------------------------------------------------------------------------------KIPSIATGLVGALLLLLVV---ALGIGLFIR---RRHIVRKRTLRRLLQERELVEPLTPSGEKL----WS--------------------------------------- |
9 | 5a79A | 0.14 | 0.12 | 4.12 | 0.64 | SP3 | | VSLTAKGIEDQWDTQVVEAGVFDDWWVHVEAWNKFLDNLRGINFSVASSQVAEYLAALDRDLPADVDRRFAGARGQIGSPNYLPAPKFFRLDKRTIAELTRLSRLTD------QPHN------NRDIELNRAKRLTLRDVQPLK-----DSALHYQYVLI---DLQSARLPVYTRKTFER--ELALEWIIPD |
10 | 4k0mC | 0.04 | 0.04 | 1.83 | 0.84 | PROSPECTOR2 | | KVYTRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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