Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60
| | | |
| Seq | AALGSSEEESTIGNYASGPEAFNTQFLNIDKLRAAFKPEEFLNWHALFESIKRKLPFLNWDAFPKLKGLRSATPDAQ |
1 | 5dooA2 | 0.11 | 0.10 | 3.78 | 0.90 | SPARKS-K | | DLNNEQENISFYYENLPEPFITTSAIMKLYVYAENI--SNPIRLEQVAKEAFKKLGATLEQHFITLQGYLKIFETKP |
2 | 5kgqA | 0.20 | 0.16 | 4.97 | 0.39 | FFAS-3D | | SAMGHMVKISH---------------EDTQRIKTAFQGQDKVTEAMIDQLICGAFPGLSWEQLQEKKKGRAAAN--- |
3 | 5ol9A | 0.09 | 0.08 | 2.94 | 0.21 | HHpred | | --------NALDKLFSSEQ--QASILHVLNTATKELEAFRLLRSINIVEHRENFGPFQNLESLMNVPLFKYKST--- |
4 | 1aa7A1 | 0.24 | 0.21 | 6.48 | 0.72 | MUSTER | | MSLLTEVETYVLSIIPSGP--LKAEI--AQRLEDVFAGKNT-DLEVLMEWLKTR-PILS----PLTKGITLTVPSER |
5 | 6epcP | 0.26 | 0.09 | 2.81 | 0.43 | CNFpred | | ----------------------------YKDLLKLFTTMELMRWSTLVEDYGVEL---------------------- |
6 | 6iiuA | 0.35 | 0.17 | 5.04 | 0.45 | HHsearch-2 | | -------------------------------------ADLEDNWETLNDNLKVIEKADNADALTK---MRAAALDAQ |
7 | 5eqzA1 | 0.16 | 0.13 | 4.32 | 0.71 | Neff-PPAS | | --------------YVEEKKEIDSLMEDVLALVNDSSGGKFKDYKDKINELKENLKDINAELKEKLLNLQNSFQDKL |
8 | 3da7C | 0.18 | 0.13 | 4.22 | 0.38 | HHsearch | | ------MKKA----VINGE-----QIRSISDLKKELALPEYENLDALWDCLTGWVPWRQFEQSKQ------LTENG- |
9 | 3eezA2 | 0.18 | 0.18 | 5.91 | 0.72 | SP3 | | VKLETDAGEGTPWGHTYVPAHGPGIRAGIETMAPFVLGLDPRRLLDVERAMDIALPGHLWDIAGQAAGLGSRTPRPF |
10 | 5lxlA | 0.07 | 0.06 | 2.73 | 0.44 | PROSPECTOR2 | | MGIDYSGLRTIFGEKLPETVAAHKYVPSYAFLRRELGLSSAHTNRKVWKKFVEAYGKAI--PPAPPAPPLTLSKLEH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|