>PF15113 (410 residues) SRYLFRHPYSRLITAYLVVFCNFLIFAEDPVSHSYRECVIDVIGEIYTFIFIRWPRGSFS LIKFSCWMFAVVLGMCIGKWIVHGWLFCKKLKLKMFTEDGQGSWMVMFLTSLLSLFIFSF AYNGFLMLEGKYMDKMHASNRMGMENQTFMKMAAIGTWLGDFITAWMVTDMMLQGAQYAH WAPGLRSFWKKGLNRVYAFWFVFVAMTIVVSTAISTDYVNWDRINRDFVASNELARAFLA SFILVMDLMIVIQDWEFPHFAGSLDIKLPGVNSDAFDVRLPSCCGGKPIDIYITGKWFNY GIIFIVMILDLNMWKNQIFYEPFAYGQYTDPEGYIYTVSDSQFLRWGNRSLLSYEYRWNQ INPKTNKTYGLEDLRMNAKYKGYSLTLKGIAFVPSIFAFCVFGYFLYLFG |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SRYLFRHPYSRLITAYLVVFCNFLIFAEDPVSHSYRECVIDVIGEIYTFIFIRWPRGSFSLIKFSCWMFAVVLGMCIGKWIVHGWLFCKKLKLKMFTEDGQGSWMVMFLTSLLSLFIFSFAYNGFLMLEGKYMDKMHASNRMGMENQTFMKMAAIGTWLGDFITAWMVTDMMLQGAQYAHWAPGLRSFWKKGLNRVYAFWFVFVAMTIVVSTAISTDYVNWDRINRDFVASNELARAFLASFILVMDLMIVIQDWEFPHFAGSLDIKLPGVNSDAFDVRLPSCCGGKPIDIYITGKWFNYGIIFIVMILDLNMWKNQIFYEPFAYGQYTDPEGYIYTVSDSQFLRWGNRSLLSYEYRWNQINPKTNKTYGLEDLRMNAKYKGYSLTLKGIAFVPSIFAFCVFGYFLYLFG | |||||||||||||||||||
1 | 3rkoB | 0.11 | 0.09 | 3.34 | 1.47 | CNFpred | IGFNLVLDGLSLTMLSVVTGVGFLIHMY-ASWYMRGEEGYSRFFAYTNLFIAS-----MVVLVLADNLLLMYLGWEGVGLCSYLLIGFGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAFADGNNMLMWATLMLLGGAVGKSAQLQTWLADAMAGPTPVSALIHAAT-VYLIARTHGLFLM-TPEVLHLVGIVGAVTLLLAGFAAL-------------VQTDIKRVLAYSTMSQIGYMFLALGVQ-------------------------------AWDAAI-FHLMTHAFFKALLFLASGSVILAC-QNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFF-------------SKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVF | |||||||||||||
2 | 6iiuA | 0.09 | 0.08 | 3.17 | 1.01 | Neff-PPAS | NAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLPCFRPTNI-----TLEERRLIASPWFAASFCVVGLASNLLALSVLAGA-------TRSSFLTFLCGLVLTDFLGLLVTGTIVVSQHAALF----EWHAVDPGCRLCRFMGVVMIFFGLSPLLLGAAMASERYLGITRPFSRPAVASQRRAWATVGLVWAAALALGLLPLLGVGRYTVQYP-------GSWCFLTLGAESGDVAFGLLFSMLGGLSVGLSFLLNTVSVATLCHVYHG--MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLC--GVGKDQFEEVEERDSEVEMMAQALGIMVVASVCWLPLLVFIAQ | |||||||||||||
3 | 3wajA1 | 0.06 | 0.06 | 2.51 | 1.20 | PROSPECTOR2 | VKLRILNPWNSVFPWYYYRLIENTIHNFPHRIWPFTYYPYGSYTHLGSIAGIIFSATSGESLRAVLAFIPAIGGVLLTREVFDKRAIVPGQFLQRSILGFNDHHIWEAFWQVSALGTFLLAY--------NRWKGHDLTARQMAYPVIAGITIGLYVLSGAGFIIAPIILAFM-------FFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGRKGMPLAVIVLTALIMGLFFVLTNAVLHFGARSFPEAAVSAVYSALALSVVFDKLHFRVILADAQSSYAGGPNKQWYDTWMRENTPDGEKYDEYYLQLYPTPQSNKEPFSYPFETYGVISWWD---------------YGHWIEAVA | |||||||||||||
4 | 4zwjA | 0.07 | 0.07 | 2.77 | 0.75 | SPARKS-K | QHKKLRTP--LNYILLNLAVADLFMVLG-------------GFTSTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVPMSNFRFGENHAIMGVAFTWVMALACAAPPSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEQKAEKEVTRMVIIYVIAFLICWVPYASVAFYIFTHSCFGPIFMTIPAFFAKSAAIYNPVIYICMLTTISVTIYLGKRDYVDHVSQVE------PVDGVVLVDPELVKGKKVYVTLTGQ-------EDIDVMGL-TFRRDLYFSRVQVNTYPFPDYSVMLQPAPQDVGKSCGVDFEVKAFASDIDPEEDKIPKKSSVRLLIRKVQHAPPEMGPQPSAEASWQFFMSDKPLNLS | |||||||||||||
5 | 6nf4A | 0.11 | 0.08 | 2.91 | 0.91 | FFAS-3D | --------WIRGGLTMLLIMFRIGYFVGYHSCISAALGVYPIVHALHTISQVHFLWERFGVIHAVLWCNGVMSLYYLYPFNIEYHIFVSAMLFVMWKNIGLLLGPLGGLVALASSVSVLVVYLIHLEKTEEMHEA----------AVSMFYYYGVAMMACMCVGSGTGLLVYRMENRPMDTGSNPARTLDTELLLASSLGSWLMSWCSVVASVAEAG------QKSPSFSWTSLTYSLLLVLEKCIQNLFIVESLY----------------------------------RPGRKRQILKNICMFLFMCNISLWILP-----------------------------------AFGCRPQYDNP------------LENETFGTSVWTTVLNVAIPLNLFYRMHSVASLF- | |||||||||||||
6 | 5t03A2 | 0.10 | 0.04 | 1.36 | 0.31 | HHpred | YITMLRDPVSRYLSEWKHV-----QRGASPTQDELPTCYNGDGVTLHDFMD--CPSANNRQVRMLADLSLVRNPILLAS-AKSNKNMAFYGLTEFQRKT---------------QYLFERTF------HLRFISAFT---QINSTRAA---NVELRDDMRSRIEQLNMLDMQLYEFAKDLFLQRYQF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 6f2gA | 0.12 | 0.10 | 3.70 | 0.67 | MUSTER | PTAVYGAGLLAWFVAGIITIAGGLTVAEYPQTGGMMIYLEKVYGRWLGFLVG----QMVIYYPANIAALAIIFATQFVNLF-TIVPTAILTSIFLM-----GGWIQTLATILKLIPLVVIIVAGLLYPGGGVIRLVPFSVETHPVLTSFGSALIATLFAYDWINVGTLAGEM------KNPGKMLPKVIIG------GLSIVMAVYLLTNIAYLFV--LDSSQLAGTDTPAALVASHLIGSKLVTIGILISV----FGGINGYI---PYALATQKM---LPFSRINPKTNLPINGGLVMLGIAIVMILTQFNQLTDLIV-----FVIWF-----FITLTFIAVIILRKTQPIERPYRV-PFYPVIPLIAI---------YIIFNTLIVQPKNAFIGILLTLIGIPIYFYC | |||||||||||||
8 | 4he8F | 0.09 | 0.08 | 2.96 | 1.41 | CNFpred | IPFSLLLDNLSGFMLLIVTGVGFLIHVY-AIGYMGGDPGYSRFFAYFNLFIAM-----MLTLVLADSYPVMFIGWEGVGLASFLLIGFWYKNPQY-----ADSARKAFIVNRIGDLGFMLGMAILWALY----GTLSISELKE-KNPDLLALAGLLLFLGAVGKSAQILMVWLPDAMA--GPTPVSALIHAATMVTAGVYLIARSSFLYSYAIAVVGLLTAAYGALSAFGQTDIKKIVAYSTISQLGYMFLA-------------AGVGAYWVA-------------------LFHVFTHAFFKALLFLASGSVIHAL-QDVRKMGGLWKHLPQTRWHALIGALALGGLPLLSGFWS----------KDAILAATLTYPFG-GVGFYVGALLVAVLTAMYAMRWFVLVFL | |||||||||||||
9 | 5tj5A | 0.14 | 0.10 | 3.24 | 0.57 | HHsearch-2 | AQYREINAGLPTIVTFPFMF------AIM-------------FGH------------GFLMTLAALSLV------LNEKKINKMK---RGEIFDMAF---TGRY-IILLMGVFSMYT-GFLYN-------------GTENALLFSNSYKMKLSILMG------FIHMTYSYFFSLANHL-------DIIGNFIPGLLFMQGIFGYLSVCIVYKWAVDWVK----DGKPAP------GLLNMLINMF---L------SPG---TID--------DEL---YPH------------QAKVQVFLLLMALVCIPWLL----LVKPLHFKF--DIHQVIHTIEHTASYLRL--WALSLAHA--------QLSSVLWTMTIQIAFGFRG-FVGVFMTVALFWFALTCAVLVLMEG | |||||||||||||
10 | 3wajA1 | 0.07 | 0.07 | 2.69 | 1.01 | Neff-PPAS | --LGGNDPWYYYRLIENTIHNFPHRIWFDPFTYYPYGSYTH-FGPFLVYLGSIAGESLRAVLAFIPAIGGVLAILPVYLLTREVF-----------DKRQRSILGFNDHHIWEAFWQVSALGTFLLAYNRWKGHDLTARQMAYPVIAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFV--------NADRKNLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGLHFGALFFFGMAGILYSAYRFLKRRSFPEMALRFAYYFAAVSAVYSALALSVVFDKLHTYILADAQSSYAGGPNKQWYDALTWMRENTPDGEKYDEYYLQLYPTPSNKEPFSYPFETYG-------------VISWWDYGHWIEAVA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |