>PF15112 (308 residues) RFNNPGYKNWLRVGIALLTTRDGLTNVTEQAAKELQAELKTKLGDSVQNCTCNPKSRGCK DCDPWRDELKKYYTGDANRIGWTNCTPNKWRKEPWEVAKVFMLKGQPADNTGPEKSDPSA LLNFLVFCNYCRKYISKVEPLKNVIEVRNKTMHSLDLRLDRQTFNEYMDKMERLLRLVGD PTAQKAAKEIFKIKKEEFHIGAGKACMDAEVRVLTDVMNEHQKLLQLHREELEDHGTRLD TLEHCTVPKEEMLKTVEVLLKVVKNNTDLHRALKDQALELSATVQQLQDRLGKAERDITE VRGAMGQL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RFNNPGYKNWLRVGIALLTTRDGLTNVTEQAAKELQAELKTKLGDSVQNCTCNPKSRGCKDCDPWRDELKKYYTGDANRIGWTNCTPNKWRKEPWEVAKVFMLKGQPADNTGPEKSDPSALLNFLVFCNYCRKYISKVEPLKNVIEVRNKTMHSLDLRLDRQTFNEYMDKMERLLRLVGDPTAQKAAKEIFKIKKEEFHIGAGKACMDAEVRVLTDVMNEHQKLLQLHREELEDHGTRLDTLEHCTVPKEEMLKTVEVLLKVVKNNTDLHRALKDQALELSATVQQLQDRLGKAERDITEVRGAMGQL | |||||||||||||||||||
1 | 3zh9B | 0.09 | 0.08 | 3.20 | 0.72 | SPARKS-K | GEVHPVYCLYGKETYLLQETVSRIRQTVQETKDFNLDPLDQAIADAETFPFTGEKKKEKIEHNV--SALESYIQSPAPYTPYEKLDERK------KLTKALKKHAFMMEAKELNAKETTDFTVNLAKT---EQKTIGTEAAEHLVLLVNG------------HLSSIFQEIQKLCTFIGLDDVKMLVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQPIKIMALISNQFRLILQTKYFAEQGYGQKQIASNLVKLAMDQARLFS--EEELRLIIEQLAVMDYEMKTGKKDKQLLLELFLLQLLKR | |||||||||||||
2 | 4ckgA1 | 0.12 | 0.09 | 3.30 | 0.99 | FFAS-3D | -KDSPRFRASIEVEAEVSELETRLEKLL-KLGTGLLESGRHYLAAS----------------RAFVVGICDLARLGPPE------------------------------------PMMAECLEKFT------------VSLNHKLDSHAELL--------DATQHTLQQQIQTLVKE-GLRGFREARRDFWRGAESEAALTHNAEVPRRRAQEAEEAGAALRTARAGYRGRALDYALQINVIEDKRKIMEFVLRLVEAQATHFQQGHEELSRLSQYRKELGAQLHQLVLNSAREKRDMEQRHVLLKQ- | |||||||||||||
3 | 1vt4I | 0.14 | 0.10 | 3.42 | 0.37 | HHpred | --GLATWDNWKHVNCKLTTIIESSLNVLEP------AEYRKMFDRLSV-FPPSAHIPTILLSLIWFVVVNKLHKYSLVQPKSTISIPSIYAVDHYNIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIELFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-----PYCDNDPKYERLVNAILDFLPKIEEN---LIC-SKYT-------------------DLLRIAL----MAEDEAIFEEAHKQVQR-------------------------------------------------- | |||||||||||||
4 | 5nnvA | 0.13 | 0.09 | 3.29 | 0.90 | MUSTER | ---------------------------AKEEELAESSAISAKEAKIED------TRDKIQALDESVDELQQVLLVTSEEL------------EKLEGRKEV----------------LKERKKNAV---------QNQEQLEEAIVQFQQKE-----TVLKEELSKQEAVFETLQA--EVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDT-YERELKEKRLYKQKTTLL | |||||||||||||
5 | 5j1iA | 0.08 | 0.06 | 2.31 | 0.85 | CNFpred | -----TLGKLEQVRSLSAIYLEKLKTISIRGTQGAEEVLRAHEEQLKEAQAVPATLPELEATKASLKKLRAQAEA------------------QQPTFDALR-------------DELRGAQEVGERLQ--QRHGERDVEVERWRERV-------------AQLLERWQAVLAQTDVR-QRELEQLGRQLRYYRE----------------------------SADPLGAWLQDARRRQEQIQAM-QAVREQLRQEQALLEEIERHGEKVEECQRFAKQYINAIKDYELQL-KVQSGSESVIQEYVDL | |||||||||||||
6 | 3c4bA | 0.14 | 0.04 | 1.33 | 0.72 | HHsearch-2 | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAEKTLNHLISGFETFEKKIN-YRFKN---KAYLLQAFTHASYHYTDYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN | |||||||||||||
7 | 6gy6B | 0.09 | 0.09 | 3.44 | 1.21 | Neff-PPAS | -GIEIINDKVKRISAYSREFDEMMRDSLAQLAPVLKQLTSDAFQTIAQIDEALADPSLSKDDREALTLERNNLIQNLSKHIDNVIVSFTGRTSKLTNKISDISDMVIAER--LQDLVTQTESQKTELQSDIDPKTEKRNKLDADREKIIESQDVIRQNNIADMFKDFIPSAKDIDGLDFTQPKKEAIKQAIKQGAEIARKILGKVSEGLKYIDLADARMKLSDQIDQLITETDELKAKIREVELRLSGLKDVMQIDTERTTLLTEAVKIEQVWISFAEQLHKLSNDEIN-QQDLSNLINGQLDFLNNL | |||||||||||||
8 | 4ce4h | 0.12 | 0.04 | 1.49 | 0.98 | HHsearch | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGG-GGGGGGG------GGGGGGGGGGGGGGG---GGGG--GGD---YHAEIQAFGHRLQ-ETF-S---LDLLKTAFVNSCYIKSENQELSEQGISFSQTCLTQFFEDAFPDLPTEGVTSLVDFLTS- | |||||||||||||
9 | 3nowA | 0.08 | 0.07 | 2.97 | 0.68 | SP3 | ALNSVERTKGVLTELGVPWFMRVLDENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD---RTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDSSSTIASVCLARIYENMYYEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGP----------LDVGNQVVAREGILQMILAMATTDDELQQRVACECSKKDKAKALCEQGVDILKRLYHSNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRF | |||||||||||||
10 | 2yfaA | 0.06 | 0.04 | 1.88 | 0.96 | PROSPECTOR2 | ---GSHMGDIGQLNKDLTDLRIARLQYMIANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLN---------------------KMRQGY-----------DATRAARVSMDSSA-----------IRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLL--------QVRIDVRGYIAEN----------------SSANEQAALRQLDAALADTDNLKRQ----------LPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLER | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |