>PF15089 (425 residues) SPGNRNFLTERPVVVMGEECGSMDEQRQSDFITEKQSVQHIWGENRRELSNFFESVNQPK ASLISENCNSFISENVINLLSIDQQRIKKTFDKCGYDSMGDICAITSSDKNDSTDRCVRR IFTDPVLTLSNSTFNKTSYPEKCQPNKRYQKEYHSNERNTLSTSFEKDCYAASFEKKGKF KSDYQEKTPQNGSQKYPVNHMGNISLEELHSKQSWDFGFGEILMEEGGTCSLKDRPTSAK KIYLDSSQSSQSTSYSPRPTDSCFSSSSEMPSEDEDQILQQIEESNRRSIRIKETTNNFY LEMMPKFPCGRIIKNNAKIHKQNENCHQFSLKNKTDQIPQSQCNSAHILQNKTSNNCILQ VARCDAWVQTGYEPAMEEKLDAAVQCDIISKCKCRSNVSSLCNVERCSEDIKADTTGGQE ILKNN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SPGNRNFLTERPVVVMGEECGSMDEQRQSDFITEKQSVQHIWGENRRELSNFFESVNQPKASLISENCNSFISENVINLLSIDQQRIKKTFDKCGYDSMGDICAITSSDKNDSTDRCVRRIFTDPVLTLSNSTFNKTSYPEKCQPNKRYQKEYHSNERNTLSTSFEKDCYAASFEKKGKFKSDYQEKTPQNGSQKYPVNHMGNISLEELHSKQSWDFGFGEILMEEGGTCSLKDRPTSAKKIYLDSSQSSQSTSYSPRPTDSCFSSSSEMPSEDEDQILQQIEESNRRSIRIKETTNNFYLEMMPKFPCGRIIKNNAKIHKQNENCHQFSLKNKTDQIPQSQCNSAHILQNKTSNNCILQVARCDAWVQTGYEPAMEEKLDAAVQCDIISKCKCRSNVSSLCNVERCSEDIKADTTGGQEILKNN | |||||||||||||||||||
1 | 5jcss | 0.09 | 0.09 | 3.36 | 1.36 | SPARKS-K | HQKDSSNKIYNLNMIGMRIWNVIEEPSEEDLTHILAQKFPILTNLIPKLIDSYKNVKMNTKFISLNKGAHTRVVSVRDLIKLCE-RLDILFKNNGIN----------KPDQLIQSSVYDSIFSEAADCFAGAIGEFKALEESLDIASSRISLFLTQHVPTLENLDDS----IKIGRAVLLKEKLNIQKKSMNSTLFAFTNHSLRLMEQISV--CIQMTEPVLLVGETGTVQQLAKMLAKKLTVINVSQQTETGDYKPKTQENFETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNF------VEGSLVKTIRAGEWLLLDEVNLAT-ADTLESISDLLTEPDSRSILLSDAEPIKAHP | |||||||||||||
2 | 2bsgA | 0.09 | 0.07 | 2.73 | 2.31 | Neff-PPAS | ------VLNDLPFV----DGPPAEGQSRISWIKNGEEILGADTQYGS-------EGSMNRPTVSVLRNVEVLDKNIGIL-------------------------KTSLETANSDIKTIQINKKDISDLKTLTSEHTEILNGTNNTVDSILADIIRNDLLWIKRELMKHRIINNT---DVITSQGIRLSLTIEVGNLREEL---------VYSRLNEIDTKQTTVESDISAIKTSISIITSVNTNTDNIASINLEIKQRLTVIETSIIKGQIKDNTTSILRANVSWLNQIVSLLNRVSTIETSVSGLNN-------------AVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNI------SSLQGDVQALQEAGYIPEAPRDGQAYVRKDG | |||||||||||||
3 | 2nbiA | 0.11 | 0.11 | 3.96 | 1.73 | PROSPECTOR2 | QPSDLNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPS-----------PDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDEMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPKSDSARPPDCTAVGRPDCNVLNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSECADVLELCPYDTCFLPFDDSSRPPDCTDPSVNRPDCDIDFTCPTCCPTQCRPDNPMFSPSPDGSPPVCSPTMMPSPLPSPT | |||||||||||||
4 | 4btgA3 | 0.11 | 0.09 | 3.33 | 1.28 | SPARKS-K | ---------------------------GFNLKV-KDLNGSARGLTQAFAIGELKNQLSVGALQLPLQFTRTFSASMTSELL--------------WEAYVYRVGRTATYPFDANA-VVSSVLTILGRLWSPST------PKELDPSARLRNTGIDQLRSNLALFI---AYQDMVKQRGRAEVIFSDEELSTIIPWFIEAMSEVSPFKLRPINETTSYIGQTSAIDHMGQPS-----HVV--VYEDWQFAKEITAFTPVKLAN--NSNQRFLDVEPGISDRMSATLAPIG-NTRGTVNSNGAEMTLGFPSVERDYALDRDPMVAAALRTGIVDESLEARASNDLKRSMFNYYAAVMHYAVAHNP--EVVVSEHQGVAAEQGSLYLVWNVIPVGYNAIEGGSIRTPEPLNKPIQPSEVLQAKVLDLA | |||||||||||||
5 | 6em5n | 0.16 | 0.11 | 3.66 | 0.50 | FFAS-3D | -----QYLMHEPVL------AKFREHK----TFARKLTRALGRGEVSSAKRLEENRSYTLDHIIKERYPSF--PDAIRDID-DALNMLFLFSNLPSTNQVSSKIINDAQKICAKERLVRKVFVSIKGVYYQANIKGEKFPENIPSDVDFRIMLTFLEFYSTLLHFVLYKLYTDSGLIYPPKLDLKKDKIISGLSSYILESRYDSPVASLFSAFVFYVSLEFLILSCGGTHQIVDRPVLKNKVAINKGELVPANKYSPWEEKKL---KMIMMSNKQKKLYKKMKYSNAKKEEQAE----------------NLKKKKKQIAKQ------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 1ah7A | 0.12 | 0.03 | 1.08 | 0.30 | HHpred | ---FYDPDNGKT-Y-IPFAKQAKETG-AKYFKLAGESYK---NKDMKLSLHYLGDVNQPMHAANFTN---LS----------YPQGFHSKYENDNYKV------T-D-------GNGYWNWGTNPEEWIHGAAVVKQDYSGIV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
7 | 1r70B | 0.11 | 0.11 | 3.80 | 0.89 | MUSTER | QSGAEVKKPGASVKASGYSFTSYG-VRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS----SLRPEDTDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLDSTPQNVVVAFFPQEPLSSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVT-----KHYTNPSQDVTVPCPVPPPPPCCHPRLSLHRPALEDLLLGSETCTLTGLRDSGATFTWGKSAVQGPPERDLCGCYSVSSVLPGCAQPWNHGETPELKTPLTANITKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRV----AAEDWKKGDT----SC-MVG-----EALPLAFTQKTIDRLAGKPTHVNVSVVMAE | |||||||||||||
8 | 1qvaA | 0.11 | 0.03 | 0.93 | 0.45 | CNFpred | ------------VHACIGGTSFVEDAEGAQIVVGTP----------GRVFDNIQRR-----RFRTDKIKMFILDEADEMLSSFKEQIYQIFTLLP----TTQVVLLSATMPNDVLEVTTKFMRNPVRILV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 2pffB | 0.15 | 0.14 | 4.61 | 0.81 | HHsearch-2 | ----MDAYSTRPLTLSHGSLEHVLVPTASFFIASQ-----LQEQFNKILPGFAADDEPTTPAELVGKFLGYVSS--LVEPSKDQVLCLTEFENC-YLEGNDIHALAALQENDTTKELIKNYITMAKRPFDKK-SNSALFRAV--GEGNAQLVAIFGGFEELRDLYQTYHVLVGLEWLENPSNTYISCPLIGELRSYLKGATGHVTAVAIAETDSWESFFVSVRVRCYEAYPNTSLPPSIL----EDSLENNEGVPS-----PMLSISNLTQEQVQDYVNK----TNS-HLPAGKQVEISLVNVVSGPPNLTLRKAKAPSGLDQSRI-PFSEFSNRFLPVASPFHSHLLVKDLVKNNVSIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTFKATHILDFGPTHRNKDGTGVRVIVAGT | |||||||||||||
10 | 2bk1A | 0.09 | 0.08 | 3.09 | 2.13 | Neff-PPAS | ---NGDKIESFVPKEGKKTGNK-------FIVVERQKRSLTTSPVDISIIDSVNDRTLADKAFVENRPTILMVKRKPININIDLPGLKGENSIKVDDTYGKVSGAIDELVSKWNEKYSSTARTQYSESMVYSKSQNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEATSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNP------------------AYPISYTSVFLKDNSVAAVHNKTDYIETTSTEYGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTRDVISEYDVPLTN-NINVSIWGTTLYPGSS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |