>PF15015 (564 residues) SSRNLENTVNRVYPDQLIPKINTSKKMSTLANQPSILEMSQEVKKSCGDKQVEITVERIK MAKSIKEKQSNDLEKVAFKRKAENEEKPAGKKEAKITELDSTLITMPLPHIPLKNIMDVE VKLVYIDEEDVSYEFVESFMSTGIRPTCRAAETVDPLHVPNFNFLPQIDKWLQVALKDAS SCYRQKKYAVAAGQFRTALELCSKGAALGKPFEASAEDIASVASFIETKLVTCYLRMRKP DLALNHAHRSIVLNPAYFRNHLRQATVFRCLERYSEAARSAMIADYMFWLCGGSEQCISK LIKLYWQAMIEEAITRAESFSVMYTPFATKIRADKIEKVREVFTKTHPAYVEYIYTDLQG LHILPQTVDWSSFPPQQYLLTLGFKNKEDGKFLEKLSSRKLPTFTEHKTPFGLLTKEDTV RHMETMGKRILPILDFIRSTQLNGSFHGCSGVMEKLQYASLLSRLQRVKEQSQVINQAMA ELATIPYLQDISQQEAELLQSLMADAMDTLEGRRNDKERVWNRIQKVGRIEDFLYQLEDS FLKTKKLRTARRQKTKLKRLQTVQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SSRNLENTVNRVYPDQLIPKINTSKKMSTLANQPSILEMSQEVKKSCGDKQVEITVERIKMAKSIKEKQSNDLEKVAFKRKAENEEKPAGKKEAKITELDSTLITMPLPHIPLKNIMDVEVKLVYIDEEDVSYEFVESFMSTGIRPTCRAAETVDPLHVPNFNFLPQIDKWLQVALKDASSCYRQKKYAVAAGQFRTALELCSKGAALGKPFEASAEDIASVASFIETKLVTCYLRMRKPDLALNHAHRSIVLNPAYFRNHLRQATVFRCLERYSEAARSAMIADYMFWLCGGSEQCISKLIKLYWQAMIEEAITRAESFSVMYTPFATKIRADKIEKVREVFTKTHPAYVEYIYTDLQGLHILPQTVDWSSFPPQQYLLTLGFKNKEDGKFLEKLSSRKLPTFTEHKTPFGLLTKEDTVRHMETMGKRILPILDFIRSTQLNGSFHGCSGVMEKLQYASLLSRLQRVKEQSQVINQAMAELATIPYLQDISQQEAELLQSLMADAMDTLEGRRNDKERVWNRIQKVGRIEDFLYQLEDSFLKTKKLRTARRQKTKLKRLQTVQ | |||||||||||||||||||
1 | 5x6oG | 0.09 | 0.08 | 3.10 | 0.91 | SPARKS-K | ATQIPTTLEVTTTTLNNKQSKNDNQV-------NQLNKAQGEASMLRDNIEREKEKNIQAVKVNELVKHLQELAKLKQELQKLEDEKKFLQRKSKREVITNVKDSSSVAIEALESILLHQII----GADLSTIEILNRLKLDY-ITEFKFKNFVIAKGAP-------IGKSIVSLLLRCKKTLTDRFIDTLLEDIAVLIKEISV------HPNESKLAVPFLVALMYQIVLFICDLIRIYHHVLKVQYELIDYLIISYSFDLLEGILRVLQSTYMEFILKSFEFVYKLALTISY-KPMVNVIFSAVEVVNIITSIILNM----------DNSSDLKGSWWRDCITRLYALLEKEIKSGDVY----NENVDTTTLHMSFGLIRNIGDNELGGLISKLIYTDQSVPRVISKEDIGTAPIIGYKMEKWLLKLKDEVLNIFENLLMIYG---DDATIVNGEM---------LIHSSKFLSREQALMIERYVGQDSP--NLDLRCHLIEHTLTIIYLEEQIKQV----ESQLIMSLWRFLVCQTEMRDHRHLSLHDLTIKDQASYYEDA | |||||||||||||
2 | 5o9zG | 0.11 | 0.10 | 3.77 | 1.44 | FFAS-3D | DINDIKKARLLLNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLETAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELSRAVECC-----PTSVELWLALARLETYENARKVLNKARENIPTDRHIWMVEKIIDRAIEQWIQDAEECDRAGSVATCQAVMRAVIGTWMEDADSCVAHNALECARAIYAYALQLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARS---ILALAFQANPNSEEIWLAAVKLESERLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCLRHYEDFPKLWM-----------------------MKGQIEEQKEMMEKAREAYNQGLKKCPHSKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKAEAIFLEARPQRRTKSVDALKKVLLAVAKLFWSQRKITKAREWFHRTVKAFFYKFELQHGTEEQQEEVRKRCESAGELWCAVSKDIANWQK-KIGDILRLVAGRIKNT- | |||||||||||||
3 | 2c2lA | 0.17 | 0.07 | 2.16 | 1.12 | HHpred | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------------------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLANFGDDIPSALRIAKKKRWNSILTRLIAAERERELEECQRNHAKHDKYMADMDELFSQVIPDYL----CGKISFELMPCITP----SGITY----------DRKDIEEHLQRVGHFNPVTRSPLTQEAMKEVIDAFIENG----------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 2gw1A | 0.12 | 0.10 | 3.56 | 1.10 | MUSTER | YALALKDKGNQFFRNKKYDDIKYYNWALELKEDPVFYSNLSACYVSVGD-----LKKVVEMSTKALELKPDYSK--VLLRRASANEGL-GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLK-EKNLPSVTSMASFFGIFKPELTFANYDESN---------EADKELMNGLSNLYKESYDKADESFTKAARLFEEQL----DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKL---DSNNSSVYYHRGQMNFIL-----------------------NYDQAGKDFDKAKELDPENIFPYIQ--------------------CLAYREN-KFDDCETLFSEAKR---------KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLGIYVGIAPLVGKATLLTRNENFIEATNLLEKASKLD---PRSEQAKIGLAQMKLQQIDEAITLFE-------ESADLART----MEEKLQAITFAEAAKVQQRIRSDPVLAKKIQET- | |||||||||||||
5 | 4a1sA | 0.11 | 0.06 | 2.14 | 1.04 | CNFpred | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE--------------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRLSEGRALYNLGNVYHAKGKHLGQ----------PGKFGDDVKEALTRAVEFYQE-NLKLMRDLGDRGAQGRA--------CGNLGNTYYLLGDFQAAIEHHQ--------------------ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG--DRIGEARACWSLGNAHSGHERALKYAEQHLQL-------------------- | |||||||||||||
6 | 4aifA | 0.11 | 0.03 | 1.02 | 0.52 | HHsearch-2 | --------------------------------------------------------------------------------------------------------------------------------------------------------------------AEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLEL---DPALAPVVSRELQA-----LEARIRQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5mqfM | 0.10 | 0.10 | 3.58 | 1.53 | Neff-PPAS | HSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATG------------KPHTLWVAFAKFYEDNGQLDDARVILEKATKVNDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYSEPVQNRVYKSLKVWSMLADLEESLKAVYDRILDLRIATPQIVINYAMFLEEHFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA------KTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFKLGEIDRARAIYSFCSQICDPRTTG------------AFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQ | |||||||||||||
8 | 3rkvA | 0.14 | 0.04 | 1.27 | 0.67 | HHsearch | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR---NHPAAASVVAREMKIVTERR-AEKKA-DSRV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3zgqA | 0.10 | 0.08 | 2.94 | 1.31 | PROSPECTOR2 | SEIRKDTLKAILLELECHFTWNLLKED------IDLFEVEDTIGQQLEFLTTKSRLALYNLLAYVKHLKGQNKDEQAEEIIQQEHSDKEEVRSLVTYHMDQ-----------LEEAQKYTGKIG------------------------NVCKKLSSPSNYKLE-----CPETDCEKGWALLKFGGKYYQKAKAAFEKALEVEPDNYRLDDVKSFSLGPLRKAVSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALE---LLKKALEVTPTSSFLHHQMGLCYRAQMIQIKKA-----------THNRPKGKDKLKVDELISSAIFHFKAAM--------------------------------ERDSMFAFAYT--------------------DLANMYAEGGQYSNAEDIFRKALRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHYLEALKV--------KDRSPLRTKLTSALKKLSTKRLCHNALDVQSLSALKLEGEKRQAAEYYEKAQKIDPENAEFLTA---LCELRLSI | |||||||||||||
10 | 5mgxE | 0.16 | 0.04 | 1.36 | 0.71 | SAM | ------------------------------------------------------------------------------------------------------------PYIPPHAALCLEVTLKTAVDGPDLE----------------------------MLTGQERVALANRKRECGNAHYQRADFVLAANSYDLAIKAITSSAKV-DMTFEEEAQLLQLKVKCLNNLAASQLKLDHYRAALRSCSLVLEHQPDNIKALFRKGKVLAQQGEYSEAIPILRAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |