Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | QGQSPEPKIREYFYYIDHQGMLFLDDSKMKNFTSCFKEKKFLEFFFKRIRINDTGRYEKEFPYVSPCGRERNYIRCDDTPIVYTHIIEKSNDDGQYFLSYGHAADLLIRLFEPNKLCMFPESGRVYHPADERVGGVGLVKSSLAIELSKYFSFEAGSDQMPTHFTWKEEKHRLTQEV |
1 | 2re3B | 0.14 | 0.12 | 4.07 | 1.71 | SPARKS-K | | PVHLWNPPFNGDIDRIARDGTWFYQGTPI-------NRPA-VRLFSSILKREEDR-------FYLVTPVEKVGIRVDDAPFVAVDVEVAGQGRKQV-LTFTTHVGD-SAVAGEGPIRAQTGEPAPYVHVRA---GLEALIDRKSFYRLDLGEIEDGW----FGLWSSGSFFPLTVEE |
2 | 2ra9A | 0.14 | 0.10 | 3.29 | 1.44 | FFAS-3D | | -SEVPL-------FDINALGDWTYLGTSLPA--------KFAKLFASILHCIDDE-------YFLITPVEKVRVQVEDAPLLIVDFERAQPHSL--LNVSTSIGT----LHHNVDIKQKLTDDSVY--LPLERGLWGKLGRACYYNFVNEFNLSD---------------------- |
3 | 2re3B | 0.13 | 0.11 | 3.73 | 2.64 | HHpred | | --LWNPPFNGDID-RIARDGTWFYQGTPI-------NRPA-VRLFSSILKREEDR-F------YLVTPVEKVGIRVDDAPFVAVDVEVAGQGKQVLTFTTH--VGD-SAVAGEGPIRAQDPEPAPYVHVR---AGLEALIDRKSFYL-DLGEIED----GWFGLWSSGSFFPLTVEE |
4 | 2ra9A | 0.14 | 0.10 | 3.46 | 1.16 | MUSTER | | --------SEVPLFDINALGDWTYLGTSLP--------AKFAKLFASILHCID-DE------YFLITPVEKVRVQVEDAPLLIVDFERAQPHSL-LNVSTSIGT---LHHNVDIKQKLTDD--SVYLPLER--GLWGKLGRACYYNFVNEFNLSDLN-------------------- |
5 | 2re3A | 0.13 | 0.10 | 3.55 | 2.56 | CNFpred | | ----------DIDMRIARDGTWFYQGTPIN-------RPAMVRLFSSILKREE-------DRFYLVTPVEKVGIRVDDAPFVAVDVEVAGGRKQVLTFTTHV---GDSAVAGGNPIRMAQGEPAPYVHVR---AGLEALIDRSFYRLMDLGEIED----GWFGLWSSGSFFPLMTVE |
6 | 2re3B | 0.13 | 0.11 | 3.75 | 3.82 | HHsearch-2 | | GPAWNPPFNGDID-RIARDGTWFYQGTPI-------NRPA-VRLFSSILKREEDR-F------YLVTPVEKVGIRVDDAPFVAVDVEVAGQGKQVLTFTTH--VGD-SAVAGEGPIRAQDPEPAPYVHVR---AGLEALIDRKSFYL-DLGEIED----GWFGLWSSGSFFPLTVEE |
7 | 2ra9A | 0.14 | 0.10 | 3.45 | 1.23 | Neff-PPAS | | ---------EVPLFDINALGDWTYLGTSLP--------AKFAKLFASILHCIDD-------EYFLITPVEKVRVQVEDAPLLIVDFERA-QPHSLLNVSTSIGT---LHHNVDIKQKLTDD--SVYLPL--ERGLWGKLGRACYYNFVNEFNLSDLN-------------------- |
8 | 2re3B | 0.13 | 0.11 | 3.74 | 5.49 | HHsearch | | GPAWNPPFNGDID-RIARDGTWFYQGTPI-------NRPA-VRLFSSILKREEDR-F------YLVTPVEKVGIRVDDAPFVAVDVEVAGQGKQVLTFTTH--VGD-SAVAGEGPIRAQDPEPAPYVHVR---AGLEALIDRKSFYL-DLGEIED----GWFGLWSSGSFFPLTVE- |
9 | 2ra9A | 0.13 | 0.09 | 3.15 | 0.98 | PROSPECTOR2 | | SEVPL--------FDINALGDWTYLGTSL--------PAKFAKLFASILHCI-DDEY------FLITPVEKVRVQVEDAPLLIVDFERAQPHSL---LNVSTSIGT-LHHNVDIKQKL--TDDSVYLPLE---RGLWGKLGRACYNFVNEFNLSDLN-------------------- |
10 | 2re3B | 0.13 | 0.11 | 3.71 | 1.56 | SAM | | -HLWNPPFNGDID-RIARDGTWFYQGTPI-------NRPA-VRLFSSILKREEDR-F------YLVTPVEKVGIRVDDAPFVAVDVEVAGQGKQVLTFTTH--VGD-SAVAGEGPIRAQDE-PAPYVHVR---AGLEALIDRKSFYL-DLGEIEDG----WFGLWSSGSFFPL---- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|