Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | DKEEFAKTLEEAHVDSITCFARCHHGWLYYPSKKFPELIHPGLKNKNFLLEQIEACHKRGIKVPVYTTAQWDGRIMREHPEWLAVDENGEFIDTQGVPAPHFYHTICLNSGYRQFFKDQLQDMIEVIGVENLDGIFMDI |
1 | 4s1aA | 0.14 | 0.13 | 4.44 | 1.49 | SPARKS-K | | RLQHYVDLANRTEINAYVVDIKDDDGYVGYESNIPAVREIGAWKSKYNVDKVLKTFHDNNIHVIGRLVCFKDPVLSSKKPELAVKSVNGGSWRDNHNL----TWLDPYNKDSWPYLIEIAKEAVEKG----FDEIQFDY |
2 | 4s1aA | 0.14 | 0.13 | 4.42 | 1.63 | FFAS-3D | | -LQHYVDLANRTEINAYVVDIKDDDGYVGYESNIPAVREIGAWKSKYNVDKVLKTFHDNNIHVIGRLVCFKDPVLSSKKPELAVKSVNGGSWRDNHNLT-------WLDPYNKDSWPYLIEIAKEAV-EKGFDEIQFD- |
3 | 4s1aA | 0.14 | 0.12 | 4.20 | 1.09 | HHpred | | RLQHYVDLANRTEINAYVVDIKDDDGYVGYESNI-PGAWKS-K---YNVDKVLKTFHDNNIHVIGRLVCFKDPVLSSKKPELAVKSVNGGSWR----DNHNLTW-LDPYNDSWPYLIEIAKEAVEK-G---FDEIQFDY |
4 | 4s1aA | 0.14 | 0.13 | 4.43 | 1.56 | MUSTER | | RLQHYVDLANRTEINAYVVDIKDDDGYVGYESNIPAVREIGAWKSKYNVDKVLKTFHDNNIHVIGRLVCFKDPVLSSKKPELAVKSVNGGSWRDNHNLT----WLDPYNKDSWPYLIEIAKEAVEK-----FDEIQFDY |
5 | 4gklA | 0.18 | 0.17 | 5.60 | 1.37 | CNFpred | | SLEKDLERLKGMGINTVWLMPIHPTGSPYAIRDYY--EIDLLIGTKGDFKKFVKRAHELNMYVLMDMVAAVDNVLVKKHPEWFLRDENGNPTRKVP---SDVVDFDYSNGELREYMINMMRYWVEEF---DVDGFRCDV |
6 | 4gklA | 0.18 | 0.17 | 5.39 | 0.49 | HHsearch-2 | | SLEKDLERLKGMGINTVWLMPIHPTGSPYAIRDY--YEIDLLIGTKGDFKKFVKRAHELNMYVLMLNHAAVDNVLVKKHPEWFLRDENGNPTRK-----VP-SDVVDFDGELREYMINMMRYWVEEFD---VDGFRCDV |
7 | 4s1aA | 0.14 | 0.13 | 4.44 | 1.69 | Neff-PPAS | | RLQHYVDLANRTEINAYVVDIKDDDGYVGYESNIPAVREIGAWKSKYNVDKVLKTFHDNNIHVIGRLVCFKDPVLSSKKPELAVKSVNGGSWRDN----HNLTWLDPYNKDSWPYLIEIAKEAVEKG----FDEIQFDY |
8 | 4gklA1 | 0.18 | 0.17 | 5.38 | 0.81 | HHsearch | | SLEKDLERLKGMGINTVWLMPIHPTGSPYAIRDY--YEIDLLIGTKGDFKKFVKRAHELNMYVLMLNHAAVDNVLVKKHPEWFLRDENGNPTRK-----VP-SDVVDFDGELREYMINMMRYWVEEFD---VDGFRCD- |
9 | 4s1aA | 0.14 | 0.13 | 4.44 | 1.20 | PROSPECTOR2 | | RLQHYVDLANRTEINAYVVDIKDDDGYVGYESNIPAVREIGAWKSKYNVDKVLKTFHDNNIHVIGRLVCFKDPVLSSKKPELAVKSVNGGSWRDNHNLTWLDPY----NKDSWPYLIEIAKEAVEK----GFDEIQFDY |
10 | 3fawA | 0.19 | 0.17 | 5.36 | 1.60 | SAM | | -FSEKLDYLQKLGVTHIQLLPVL--NWGYDPQSY--FALSGMYSEIAELKQLIHDIHKRGMGVILYNHTAKTYLFEDIEPNYYHFMNEDGSPR------ESF-GGGRLGAMSRRVLVDSIKYLTSEFK---VDGFRFDM |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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