Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MGDQGPQDRPRSPGMDSKPWYCDKQPSKCFAKRKHRRLRFPPMDPRNRVFVTQGMDDFRYGCPSPEDTLVCRCDEFLLLKISLRGPQADPKSRKKKLRKKAALFSKLSRAKPARKTFVEGVEAQLTAKPPLAMNYNLGEDMPPDLLLQVLKPLDPERKLEDACACEGQGTTTDEPMEPGKYPCREFSPRPPETRVSCLHPEPPKSPVSSLCPEPPETGVSHLRPEPPETQVSSLHLEPPKTGVSSLLPEPPETQV |
1 | 5jcss | 0.06 | 0.05 | 2.29 | 1.33 | SPARKS-K | | LISTVRINEDHQKDSSNKIYNLNMIGMRIWNVEEPSEEDLTHILAQKFPILTNLIPKL------IDSYKNYMNTKFISLNKGAHTRVVSVCERLDILFKNNINKPDQLIQSSVYDSIFSEAADCFA-----GAIGEFKAL------EPIIQAIGESLDIAS----SRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFAFTNHSLRLMEQISVCIQMTEPVLLVGETKTTVVQQLAKMLAKKL |
2 | 2atyA | 0.10 | 0.10 | 3.75 | 1.03 | MUSTER | | RLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKGSTPYRHGFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVMHQDWVNSAAFPAPIEKKTKGRPKAPQLYTIPPPKEQMAKDKVSLTFPEDITPAENYKNTQPIMNT |
3 | 3cnfT | 0.08 | 0.08 | 3.08 | 2.01 | Neff-PPAS | | YARSTNYTTPVGQLVVNAPAILNYSN-----PQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWDVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVVQRLIPLSSSTYLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYIFTTAYTSMNYISNTGQGRIKHSLAVTGTTEHTIADIT---- |
4 | 2nbiA1 | 0.13 | 0.13 | 4.36 | 1.29 | PROSPECTOR2 | | QPSDLNPSSQPSECADVLPYSDASRPPSCLSFGRPDCDVLPTPQNIRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFE------CSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTR |
5 | 6e5oY | 0.10 | 0.10 | 3.64 | 1.13 | SPARKS-K | | GGGKAKVIDLTFDPDDEQPLAFGTRQGREFIWNDLLSLETGLIKLANGRVIEKTIYNFRREVVDPSNIKPRGENIPAVIALTDPEGCPLRKEKQRAIQRRAGGYSRASKSRNLADDMVRNSARDLFTHDAVLVFANLSRGQYTKMEDWLTAKLAYEG-LTSKTYLQYTSKTCSNCGFTITYADDVMLVRLKKTSDGWATTLNKAEYQITYYNKRQTVSKWTKGRRDEALFLLKKRFSHRPVQEQFVCLDCHEVHA |
6 | 2xd8A | 0.11 | 0.11 | 3.94 | 0.70 | FFAS-3D | | LGRSNLSTGTGYGGADKYALYLKLFSGEMFKGFQHETIARDLVTKRT---LKNGSSFHTPGTPILGNADKAPPVAEKTIVMDDLLISSAF---VYDLDETLAHYELRGESKKIGYALAEKYDRLIRVGSGTNESDAFTASALVNAFYDAAAVLNPRQYIQDIGSNGLVNRDVQGSALQSGNGVIEISMNIPFLGKYGVKYGGTTGETSPIGPTPENANATGGVNNDLGAKSCGLIFQKEAAGVVEPQVQNPAAAV |
7 | 6btmE | 0.14 | 0.05 | 1.73 | 0.27 | HHpred | | -------------------------------NSAPNYQYFPNMYESVAYEPYTEAKIFKGGKLPVEGTINRGFEPYEYENSTAGYEL-----AKANL-KSPL---TEEEKGKGKELFE---IYCIS-CHGAAGNG------------------------------------------------------------------------------------------------------------------------ |
8 | 4nl6A | 0.14 | 0.12 | 4.16 | 0.93 | MUSTER | | MSSGGSGGG-VPEQEDSVLFRRGTGQSKAVASFKHA--------------LKNGD------ICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKSAIWSEDGCIYPATIASIDFKEQNLSDLLSPICEVANNIEQN--------AQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIP--PPPPICPDSLDDAD |
9 | 2vwkA | 0.08 | 0.03 | 1.08 | 0.44 | CNFpred | | --------------------------------------------------------------------KFCKDFPGFIPSLLGDLEERQKVKKKMKATIDPIEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVGRQYIETTIREIE----------------------------------------------------------------------------------------------------- |
10 | 2pffB | 0.11 | 0.11 | 3.93 | 0.96 | HHsearch-2 | | MAKRPFDKKSNSAQGNTDDYFEELTLSELIRTTLDAEKVFTGLNILEWLENPSPDKDYLLSIPISCPLIVITKLLGFTPGELRSYLKGATGHSQVAIAETDSWESFFVSVRKAI----TVLFFIGV-RCYE-AYPN--TSLPPSILEDSLENNESPMLSISNLQEQVQDYVNKTNSHLPAGKQVEISLVNSRIPFSERKLFLPVASPFHSHLLVPASDL--INKDLVKNNVSFNAPVYDTFDGSDLLPVKWETTT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|