Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | ITVINALPRLGKMEIYQLCSQDDTLRQHLPQWAIFQPETAESLLSKFPVAYIKPNNLSKGVGVTKVTHNSNGFLAEQRRGSENYQHQCVDAGELLNVLSDYLNAPMVIQEAIPLRQYEGNPFDFRLLLQKNDTGQWQQTGIVARVFGKESVISSPRSGGRVATYDEAMQDLPKSERKRIATSLLNLALKIAQMLEKEFGLFAELGFDLGVDLNGDVWLIEVNGKPLKVSIERLNDKAMTAAAYERPLEYARYL |
1 | 3vpbB | 0.17 | 0.13 | 4.42 | 1.41 | SPARKS-K | | VHTINSSVCGDKILTYSKLYREGIP---IPDSIIASAEAALKAYEQRGPLIDKPPIGSWGRLVSLIR----------------------DVFEGKTIIEHRELMAHIVQEYIQ-----YKGRDIRCIAIGE-----ELLGCYARNIPPNEWRANVALGGTPSNIEVD-------------EKLKETVVKAVSIVH-----GEFVSIDILEHPNKGYVVNELNDVPEFKGFMVATNINVAQKLVEYIKENYSK- |
2 | 3tigA | 0.23 | 0.19 | 5.94 | 1.72 | FFAS-3D | | -QLVNYYRGARKASLVKLIKTSPELTEWFPESYVIEREEFRSSFNKKKVWIAKS----SSGGI----------------------LISSDATELLDFIDNQ-GQVHVIQKYLELLEPGHRKFDIRSWVLVDNQYNYLYREGVLRTSSNEMFFEE--------FNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTFQLFGFDFMVDKNLKVWLIEVNGAPAC-------AQKLYAELCKGIVDLA--- |
3 | 6gj4F | 0.20 | 0.17 | 5.43 | 2.28 | HHpred | | VQLVNYYRLCRKASLVKLIKTLSESCTWFPESYVIYREVFLAAYNRGNVWIAKS--------------------I----------LISSEASELLDFIDE--QQVHVIQKYLEPLLLGHRKFDIRSWVLVDHYNIYLYREGVLRTSSEPYHLTNHCEEGNEMFFEEFNQDLNTTLENSILLQIKHIIRSCLMCIEPAIQSFQLFGFDFMVDEELKVWLIEVNGAPACAQ-------KLYAELCQGIVDVAIS- |
4 | 3vpbB | 0.16 | 0.13 | 4.32 | 1.36 | MUSTER | | VHTINSSVCGDKILTYSKLYREGI---PIPDSIIASAEAALKAYEQRGPLIDKPPIGSWGRLVSLIRDVFE-------------------GKTIIEHRELMGNKAHIVQEYIQ-----YKGRDIRCIAIGE-----ELLGCYARNIPPNEWRANVALGGTPSNI-------------EVDEKLKETVVKAVSIVH-----GEFVSIDILEHPNKGYVVNELNDVPEFKGFMVATNINVAQKLVEYIKENYSK- |
5 | 3vpbA | 0.17 | 0.13 | 4.30 | 1.73 | CNFpred | | VHTINSSDVGDKILTYSKLYREGI---PIPDSIIALAEAALKAYEQRFPLIDKPPIGSWGRLVSLIRD----------------------VFEGKTIIEHRE-KAHIVQEYIQY-----KGRDIRCIAIGE-----ELLGCYARNIPPNEWRANVALGGTPSNI-------------EVDEKLKETVVKAVSIVH-----GEFVSIDILEHPNKGYVVNELNDVPEFKGFMVATNINVAQKLVEYIKENYS-- |
6 | 3vpbB | 0.16 | 0.13 | 4.21 | 0.79 | HHsearch-2 | | VHTINSSDCGDKILTYSKLYREGI---PIPDSIIALAEAALKAYEQRGPLIDKPPIGSWGRLVSLIRDVFE-------------------GKTIIEHRELMSAKAHIVQEYIQ-----YKGRDIRCIAIGE-----ELLGCYARNIPPNEWRANVALGGTPSNI-------------EVDEKLKETVVKAVSIVH-----GEFVSIDILEHPNKGYVVNELNDVPEFKGFMVATNINVAQKLVEYIKENYSK- |
7 | 3vpbB | 0.17 | 0.13 | 4.42 | 1.55 | Neff-PPAS | | VHTINSNVCGDKILTYSKLYREGI---PIPDSIIASAEAALKAYEQRGFLIDKPPIGSWGRLVSLIR----------------------DVFEGKTIIEHRELMGHIVQEYIQ-----YKGRDIRCIAIGE-----ELLGCYARNIPPNEWRANVALGGTPSNI-------------EVDEKLKETVVKAVSIVH-----GEFVSIDILEHPNKGYVVNELNDVPEFKGFMVATNINVAQKLVEYIKENYSK- |
8 | 3vpbB | 0.16 | 0.13 | 4.21 | 1.27 | HHsearch | | VHTINSSDCGDKILTYSKLYREGI---PIPDSIIALAEAALKAYEQRGPLIDKPPIGSWGRLVSLIRDVFE-------------------GKTIIEHRELMSAKAHIVQEYIQ-----YKGRDIRCIAIGE-----ELLGCYARNIPPNEWRANVALGGTPSNI-------------EVDEKLKETVVKAVSIVH----G-EFVSIDILEHPNKGYVVNELNDVPEFKGFMVATNINVAQKLVEYIKENYSK- |
9 | 3vpbA | 0.17 | 0.13 | 4.30 | 1.80 | PROSPECTOR2 | | VHTINSSDCGDKILTYSKLYREGI---PIPDSIIALAEAALKAYEQRGPLIDKPPIGSWGRLVSLIRD----------------------VFEGKTIIEHRELMAHIVQEYIQ-----YKGRDIRCIAIGE-----ELLGCYARNIPPNEWRANVALGGTPSNIE-------------VDEKLKETVVKAVSIVH-----GEFVSIDILEHPNKGYVVNELNDVPEFKGFMVATNINVAQKLVEYIKENYS-- |
10 | 3vpbB | 0.16 | 0.12 | 4.08 | 2.19 | SAM | | -HTINSSDCGDKILTYSKLYREGI---PIPDSIIALAEAALKAYEQRGPLIDKPPIGSWGRLVSLIRDVFE-------------------GKTIIEHRELMSAKAHIVQEYIQ-----YKGRDIRCIAIGE-----ELLGCYARNIPPNEWRANVALGGTPSNI-------------EVDEKLKETVVKAVSIVH----G-EFVSIDILEHPNKGYVVNELNDVPEFKGFMVATNINVAQKLVEYIK------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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