Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | LGADLEFMLRGKTGKIVPASRYFPRKGEVGCDDRTLHGDAGLLPLAEIRPPAATSPLRLVEHIRSALTEAAQLCPSRKIKWVAGSMPFRGFPIGGHIHFSGVPPGSRLVRMLDTYVGLPVALLEEPLTARVRRQKYGFLGDIRRKPHGGFEYRTPGSWLVSPEISTAVLCLADIAAREFEHVTEWPFLDPEVQEAFYTGNRSVLKPVFFSMWERLKRSSLFETYEEYLSVIPWMIEQDLTWDESVDIRETWDI |
1 | 1r8gB | 0.13 | 0.12 | 4.14 | 0.77 | SPARKS-K | | LGIELEQVVNPPGYDLSQDSSLIKNKI---TAGEVKHITES----LELATDVCRDINQAAGQFSA-QKVVLQAATDHHLEICGGTHPFQATVFGQHVHVGCAS-GDDAIYLLHGLSHFIALSYQGTDTASSRPNIFSAFPDNGPPWVGTVEVRVDTPL--TLSHAVNA-GLIQATAHWLLTERPFKHQEKDYFQACRYGLTEDTLRLLEKIAPSAHKIG----ASSAIEALHRQVVSGLNGSLIGLVKKHCEI |
2 | 1r8gB | 0.13 | 0.13 | 4.36 | 0.93 | FFAS-3D | | LGIELEQVVNPPGYDLSQDSSLIDAVKNKITAGEVKHITES----LELATDVCRDINQAAGQFSA-QKVVLQAATDHHLEICGGTHPFQATVFGQHVHVGCASGDDYLLHGLSRFVPHFIALSAASPYQGTRPNIFSAFPDNGPPHFGTVEVRVDTP-LTLSHAVNAGLIQATAHWLLTERPFKHQLYKFNRFQACRYGLTEDTLRLLEKIAPSAHKIGA----SSAIEALHRQVVSGLNVADGGSLIGL--- |
3 | 2gwcF | 0.12 | 0.11 | 3.92 | 0.37 | HHpred | | IGTEHEKFGFEVNLRP-KYDELLNEWKIIGLGKQSILEPG---GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEE-GIGFLGGFQPKWLRTCTVQVNLDFSSEAIRKFRAGLALQPIATALFANSPFFLSRSHRTGLPFVFRLKRY--E--RGADGG--PWRRLCALPAFWVGLLYDVLDTADWELRNKVPVTGLKTPDKHVAEDVLKLAKDGLERRGYK--EVGFLNAVTEVVRTGVTPA--ENLLE-YN- |
4 | 5cwpA | 0.15 | 0.13 | 4.37 | 0.69 | MUSTER | | MSSDEE-LIERAKEAAERAQEAAERTGD--RELARELKRLAQEAAEEVKRDPSSDVNEALKLIVEAIEAAVRALGDPEVRELARELVRLAVEAAE---VQRNPSSSDVNEALKLIVEAIEAAV----RALEAAERTG-----------------------DPEVRELARELVRLAVEAAEEVQRNP-SSEEVNEALKK--IVKAIQEAVESLREAEESGDPEKREKARERVREAVERAEEVQRDP---SGWLE |
5 | 1r8gA | 0.13 | 0.13 | 4.38 | 0.83 | CNFpred | | LGIELEMQVVNPGYDLSQDSSMLIDAVKNKITAGEVKHD-ITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHLEICGGGTHPFQATVFGQHVHVGCASDAIYLLHGLSRFVPHFIALSAAS-FASSRPNIFS-HWDIRPSPFGTVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQDYLLYKFNRFQALTEDTLRLLEKIAPSAHKI----GASSAIEALHRQVVSGLNEA--QLMRDFVAD |
6 | 5dm3A2 | 0.16 | 0.14 | 4.74 | 0.76 | HHsearch-2 | | MATELEFFLFEKSLDTTKEEHVLRHLHAAGIPVEGTKGEG----QEELNIRCA-KALDTADYHTIAKHATKEIAWQQGRAVTFLSKWHAHAGSSSHIHQSLWKQSALMKHYLAGLLKAPTYFLAPYLNSYKRFQVDNRTAGFRLCRAVRIECRIGGSD-LNPYLAMAGQL--AAGIKGIEELALIPQNLRDAMEALRGS-T-MLREAMEDVVD------HYVRAAVELEDFQRVV---------SDYEVARGF |
7 | 3k2wB2 | 0.10 | 0.09 | 3.38 | 0.86 | Neff-PPAS | | --FKNKVNFIGNESDTIDI--LSPSTGKVIGEIPAGCKADAENALEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGK---------LLSVAEMEVDVTATFIDYGCDNALTIEGDILPSDNQDEKIYIHKVPRGVVVGITAWNFPLALAGRKIGPALITGNTMVLKPTQETPLATTELGRIAKEAGTVAGKQIYKTSAEYMTPVQSGFGGEDGKFGLEQYLEKKTVYINEAE------- |
8 | 3ln6A2 | 0.09 | 0.04 | 1.67 | 1.18 | HHsearch | | --LERESLRIHQTQRVAQTPKTLGSHPYIQTDYSE--------PQLELITPIAKDSQEAIRFLKAISDVAGRSINHDEYLWPLEDIQIAQLISLETFGQRQGQIHDYAWEAPYALKGETM-----------------------------------------ELSTQLLLFDIQKGV----------------------------------------------------------------------------- |
9 | 5cwmA | 0.13 | 0.10 | 3.44 | 0.61 | SP3 | | ---DPEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREQAEKEGDPEVALRAVELVVRVAELLLRIAKES-------------------GSEEALERALRVAEEAARLAKRV----LELAEKQG--------------------------DPEVALRAVELVVRVAELLLRIAKESGSEEALERALRV--AEEAARLAKRVLELAEKQGDARRAVELVKRVAELLERIARESGSEEAKER--- |
10 | 3ix1A | 0.09 | 0.09 | 3.28 | 0.84 | PROSPECTOR2 | | ALETVEVMLDWYPNAVHTFLYVAIENGYFAEEG------------LDVDIVFPTNPTDPIQLTASQPDVILARSKDLPVVSVASVVRSPLNHVGLTVGYPGIPVNEPILKTMELGASIVSGTYINHEYPVLKHEGHDNPVDYGVPEYDELVLISNEAYVESGEVLAAFWRAALKGYEWMVE------NPDEALNVLFPLIQEVEEESLSILLEKMENGPFGGQDAESWEEVISWLDAHDWLEQPVVAEDAFIT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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