>PF14356 (422 residues) LSTVNVPVSISMKDVERQINAQINGLIYEDNTFEDNNQDNFMVKVWKRQPILVTATGGAD SLFHFTVPLKIWAKAGVKVLGFMQTQETQFEMDLRFSTRFSIDPDWAVSTQTKADGYDWI TKPTIKLAGFNVPVTSLVGKMIDKNLGTVTQTLDQQVRKQIDLKSQVLKAWNLIREPYLI SEQYRTWLMVVPKRILITPLRFDNNVIRSTIGIEGYTLTNVGAKPDVKPAVALPNLVVVP QVKDDFRIGLLSEASYEEAAKLAGQEFVGKSFSFKDGAYTITITDIDLYGQNDNLIIKAG LKGSVTGDIYLRGRPYYDPATKSVSLKELVYDLETKSLLQRAASWLLQGTFAKTLEKNLT IPVGSQIDEMQKTLQLKLQNNQIAKGVVLNGKIDEIRPDQVYLTSSALLAVVYAKGRVDV KV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LSTVNVPVSISMKDVERQINAQINGLIYEDNTFEDNNQDNFMVKVWKRQPILVTATGGADSLFHFTVPLKIWAKAGVKVLGFMQTQETQFEMDLRFSTRFSIDPDWAVSTQTKADGYDWITKPTIKLAGFNVPVTSLVGKMIDKNLGTVTQTLDQQVRKQIDLKSQVLKAWNLIREPYLISEQYRTWLMVVPKRILITPLRFDNNVIRSTIGIEGYTLTNVGAKPDVKPAVALPNLVVVPQVKDDFRIGLLSEASYEEAAKLAGQEFVGKSFSFKDGAYTITITDIDLYGQNDNLIIKAGLKGSVTGDIYLRGRPYYDPATKSVSLKELVYDLETKSLLQRAASWLLQGTFAKTLEKNLTIPVGSQIDEMQKTLQLKLQNNQIAKGVVLNGKIDEIRPDQVYLTSSALLAVVYAKGRVDVKV | |||||||||||||||||||
1 | 4m4dA | 0.08 | 0.07 | 2.74 | 1.20 | SPARKS-K | -VNPGVVARITLAYAAKEGLVALQRELYKITKIKAVGRGQYEFHSLEIQNCELSLKLLPGQLAISDSSIGVRGKWKVRKSFLKLHGSFDKGVTISVDLLLGMDPSGRPTVSASGCSSRI-CDLDVHISG-NV---GWLLNLFHNQISKLQKVLENKVCEMIQVTSDLQPYLQTLPVTAEIDNVL--GIDYS----LVAAPQAKAQVLDVMFK-----GEIFNRNHRSPVATPTPTM-SLPEDSKQVYFAINFSITDDMFTPQIYKKYPDMKLELNVSPGNLSLAEGFVILPTSEPVFRLGVVTNVFASLTFNN--------SKVTGMKAQVRLIESKVFVNLFQAFLNYYLLNS-----------LYPDVNAELAQGF-PLPLPRHI-------QLHDLDFQIRKDFLYLGANVQYMR---- | |||||||||||||
2 | 4m4dA | 0.07 | 0.06 | 2.60 | 1.39 | FFAS-3D | -----VVARITDKGLAVALQRELYKITLPDFSGDFKIKHSLEIQNCELRGSSLKLLPGQGLSLAISSSIGVRGKWKVRKSFLKLHGSFDLDVTISVDLLLGMDPSGRPTVSAS--------GCSSRICDLDVHISGWLLNLFHNQIESLQKVLENKVCEMIQVTSDLQPYLQTLPVTAEIDNVLGIDYSL------VAAPQAKAQVLDVMF-----KGEIFNRNHRSPVATPTPTMSLPEDSKQMVYFAINFSITDDMLPPQIYKKYPDMKLELNVSPGNLSLMEIEGFVILPEPVFRLGVVTNVFASLTFNNSKVTG----MLHPDKAQVRLIESKV---------GMFNVNLFQAF----LNYYLLNLYPDVNAELAQ-----GFPLPLPRIQLHDLDFQIRKDFLYLGANVQ------- | |||||||||||||
3 | 1bp1A | 0.12 | 0.10 | 3.45 | 1.55 | CNFpred | LGKGHYSFYMDIREFQ---------------------LPSSQISMVPNVGLKFSIS-----NANIKISGKWKAQKRFKMSGNFDL--SIEGMSISADLKLGSNPSGKPTITCSSCSSHI-NSVHVHISKSKVGLIQLFHKKIESALRKMNSQVCEKVTNS--VSSKLQPYFQTLPVMTKID--SVAGINYGLV----APPATTAETLDVQMKGEFYSENHHNPPPFAPPVMEFPAAHD-----RMVYLGLSDY-FFNTAGLVYQEAG-VLKMTLRDMKIQIHVSAPHLSVQPTGLTFYPAVDVQAFLASLFLIGMHTTG-SMEVSAERLVGELKLD-LLQDIMNYIVPILVLPRVN--------EKLQKGFPL--------PTPARVQLYN-------VVLQPHQNFLLFGADVVYK----- | |||||||||||||
4 | 6ektA | 0.12 | 0.11 | 3.73 | 1.23 | Neff-PPAS | -----IVYGCSKRVVNKHLKEYITKNNIQFLYSNIDKKQEIKMVFD---NWEII-NGGSSNFLRIKTPIKEGYFKVRNTTVDLSGINPVLEIKLDFFNDISNPNIKELKFNFGSESND-------DIKIIVSDLNGNLQEEDEFYFNKLLINAFIQNEKQISY----------IFASLNVTSDIE-WMN--PKQFKFVYYSPTD-------GYLFILSVVTNRDISKLSANRLSSNMGSNINKNNFEVISTSDTTGRIVNN---STLNWYGLKVAALYYYPKINNFSMQLFENKLKISLRGLVRLTFEIQSINKFVYNSTNKKAYFEVYKYHLFPGDLISLAVLSSVTHWSIKSIEGALGFELINNFVDLINN------------TIKWNNL-KISQVTNVTLN-VGFCIQGNA-------- | |||||||||||||
5 | 3l6iB | 0.12 | 0.04 | 1.43 | 1.30 | HHsearch | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HHHSHNQ----LTQYTITEQEINQSLAKHNN-FSKDIGLPGAHIVLTNLTSQREPNKVTLTGDANGKAT-KLKLKALPVFDKEKGAIFLKE-EVVDATVQPE----K----------------QTVQTLLPYLNQALRNYFNQQPA---YVLREDGAKKLAKGIEVKPGEIVIPFT--------- | |||||||||||||
6 | 4m4dA | 0.08 | 0.07 | 2.87 | 1.29 | PROSPECTOR2 | VNPVVARIAYAAKEGLVALQRELYKITLPDGDFKIKAVGRGQYEFHELRGSSLKLL--PGQGLSLAISIGVRGKWKVRKSFLKLHGSFDLDVTISVDLLLGMDPSGRPTVSASGCSSR-ICDLDVHISGNVGWLLNLFHNQIESKQKVLENKVCEMIQKS--VTSDLQPYLQTLPVTAEIDNVLGIDYSL------VAAPQAKAQVLDVMFKGE-----IFNRNHRSPVATPTPTMSLPEDSKQMVYFAINFSITDDMLPHDIYKKYPDMKLNVSPGNLSLAPQEIEGFVILPEPVFRLGVVTNVFASLTFNNKVTGMLHPDKAQVRLIESKVGMQAFLNYYLLNSLYPDVNAELAQGFPLPL--------------------PRHIQLHDLD-------FQIRKDFLYLGA----NVQYMR | |||||||||||||
7 | 1bp1A | 0.12 | 0.10 | 3.63 | 1.20 | SPARKS-K | -VNPGVVVRISLDYASQQGTAALQKELKRSDSFKIKHLGKGHYSFYSMDIREFQLPSS---QISMVANIKISGKWKAQKRFLKMSGNFDEGMSISADLKLGSNPSGKPTITCSSCSSHI-NSVHVHISKSKV---GWLIQLFHKKESALRNKMNSQVCEKVTVSSKLQPYFQTLPVMTKIDS--VAGINYGLV----APPATTAETLDVQMKG----EFYSENH-HNPPPFAPPVM-EFPAAHDRMVYLGLSDYFFNTAGLVYQEAVLKMTLRDKESKFRLTTKQIHVSASTPHLSVQLTFYPAVDVQAFAVGSMEVSAESNRLVGERLLLELKPVELLQDIMNYIVPILVLPRVNEKLQFPL------------------PTPARV-------QLYNVVLQPHQNFLLFGADVVYK----- | |||||||||||||
8 | 1bp1A | 0.11 | 0.10 | 3.64 | 1.35 | FFAS-3D | ---VVVRISQKLDYASQQGTAALQKELKRIKIPDYSDSYSMDIREFQLPSSQISMVPNVGLKFSISANIKISGKWKAQKRFLKMSGNFDLSIEMSISADLKLPTSGKPTITCS--------SCSSHINSVHVHIGWLIQLFHKKIESALRNKMNSQVCEK--VTNSVSSKLQPYFQPVMTKIDSVAGINYG----LVAPPATTAETLDVQMKGEFYS-----ENHHNPPPFAPPVMEFPAAHDRMVYLGLS----DYFFNTAGLVYQEAGVLKMPNMKIQIHVSASHLSVQPTGLTFYPAVDV----QAFAV-----LPNSALASLFLIGMHTTGS-----MEVSAESNRLVGELKDRLLLELQDIMNYIVPILVLPRVNEKLQKGFPLPTPAVQLYNVVLQPHQNFLLFGADVV------- | |||||||||||||
9 | 1ewfA | 0.12 | 0.09 | 3.37 | 1.52 | CNFpred | KGHYSFY-SMDIREFQ---------------------LPSSQISMVPNVGLKFSIS-----NANIKISGKWKAQKRFKMSGNFDL--SIEGMSISADLKLGSNPSGKPTITCS--------SCSSHINSVHVHISSKVGWLIQLFHKKIESALRNKMNSQVKVTNSVSSELQPYFLPVMTKIDSVAGINYGLV----APPATTAETLDVQMKGEFYSENHHNPPPFAPPVMEFPAAHD-----RMVYLGLSDY-TTKFFGPEVAKKFPNMKIQIHV-PPHLSVQPTGLTFY-PAVDVQAFAVLASLFLIGMHTTGSMEVLVGELKLDRLLLELKH-ELLQDIMNYIVPIL---------------VLPRVNEKLQKGFP-LPTPARVQLYN-------VVLQPHQNFLLFGADVVYK----- | |||||||||||||
10 | 4m4dA | 0.09 | 0.09 | 3.21 | 1.21 | Neff-PPAS | -----VVARITLAYAAKEGLVALQRELYKSGDFKIKAVGRGQYEFHSLRGSSLKLLP--GQGLSLAIS-DSSIGVRGKWKVRKSFLKLHGSFDLDVKG-VTISVDLLLGMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVSVTSDLQPYLQTLPVTAEIDNV--LGIDYS----LVAAPQAKAQVLDVMFKGEIFNRNHRSPVATPTPTMSLPESITDDMLPHDSGIRLNTK-AFRPFTPQIYKKYPDM-----KLELLGTVVSAILNVSPGNLSLAPQMEIEGFVVTNVFASLTFNNSKVTGMLHPDKAQVRLIESVGMFNVNLFQAFLNYYLLNS-----------LYPDVNAELAQ-----GFPLLPRHIQLHDLDFQIRKDFLYLGANVQYMR---- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |