Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | QMGFEIKFFKNIKELEDNSKEDVIVSFVDDVRMALHRYNIITPEIDYPEELKNYLGRKVWKTKLSVIANNPDNWNVFIKPIEDKKFTGVVVRSTKDLIGCGTYNEDPDIFCSEIVNFVAEWRCFVWYGKILDIRRYRGDWKMHFDPSVVENAVAQFKSAPKGYAIDFGLTDKGETLLIEVNDGYSLGCYGLFDIDYAKLLSARWAEL |
1 | 3vpbB | 0.09 | 0.09 | 3.45 | 1.30 | SPARKS-K | | ENKVQYDIINVAQEPLPFNYDVAIIRPALYSSAVLEAAGVHTINS--SDVINVCGDKDSIIASAEAALKAQRGFPLIDKPPIGSWGRLSLIRDVFEGKTIMGNSALKAHIVQEYIQYKRDIRCIAIGEELLGCYARNIPPNEWRAKETVVKAVSIVH--GEFVSIDILEHPNKGYVVNELNDVPEFKGTNINAQKLVEYIKENYSK- |
2 | 1i7lA | 0.11 | 0.11 | 3.97 | 1.27 | FFAS-3D | | ----DMQVLRNGTKVVRSFRPDFVLEDFRHLVIGMQYAGL--PSINSLESIYNFCDKPWVFAQMVAIFKTLPTFPVVVKIGHAHSGMGVKVENHYDFQDIASVVAQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISGNWKTNSDRYKLWVDACSEMFDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQRQLITDLVISKMNQL |
3 | 3vpbB | 0.10 | 0.10 | 3.71 | 0.84 | HHpred | | ENKVQYDIINVAQEPLPFGYDVAIIRPALYSSAVLEAAGVHTI--NSSDVINSKIPDSIIALSAEAALKAQRGFPLIDKPIGSWGRLVSLIRDVFEGKTRELMSALKAHIVQEYIQYGRDIRCIAIGEELLGCYARNIPNEWEVDEKTVVKAVSIV-HG-EFVSIDILEHPNKGYVVNELNDVPEFKATNINVAKLVEYIKENYSK- |
4 | 1i7lA | 0.09 | 0.09 | 3.47 | 0.90 | MUSTER | | TYAVDMQVLRNGTKVVRSFRPDFVL-DFRHLVIGMQYAGLPPWVFAQMVAIFKTLGGQTYYPNHREM-LTLPTFPVVVKIGHAHSMGKVKVENHYDFQDIVVALTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISGNWKTNSDRYKLWVDACSEMLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQRQLITDLVISKMNQL |
5 | 1i7lA | 0.08 | 0.07 | 2.82 | 1.35 | CNFpred | | ---------------------LPSINSLESIYNFCDKP-------WVFAQMVAIFLIEQTYYPNHREMLTLPTFPVVVKIGHAHSGGKVKVENHYDFQDIASVLTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSAMLEQIAMSDRYKLWVDACSEGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHDRQLITDLVISKMNQL |
6 | 4zgnA2 | 0.20 | 0.08 | 2.48 | 1.11 | HHsearch-2 | | ----------------------------------------------------------------------------------------------------------------FPMHASTEFRCFVKSKRLIAFCQRDD-NYYEFNIDCYEKLISDLLPD-PDFVFDVYIHK-DRAWLIDINPFYPRT----------DGLLFSWSEL |
7 | 1i7lA | 0.10 | 0.10 | 3.73 | 1.32 | Neff-PPAS | | TYAVDMQVLRNGTKVVRSFRPDFVLIDFRHLVIGMQYAGLPSIVFAQMVAIFKTLGGEQTYYPNHREMLTLPTFPVVVKIGHAHSGMGVKVENHYDFQDIASALTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISGNWKTNKLWVDACSEMFGGLD-ICAVKAVHGKDGKDYIFEVMDCSMPLIGEHDRQLITDLVISKMNQL |
8 | 4zgnA2 | 0.15 | 0.06 | 2.13 | 1.55 | HHsearch | | ----------------------------------------------------------------------------------------------------------------FPMHASTEFRCFVKSKRLIAFCQRDD-NYYEFNIDCYEKLISDLLPD-PDFVFDVYIHK-DRAWLIDINPFYPTDLFSWS--ELESMNAQKWQD- |
9 | 1i7lA | 0.09 | 0.09 | 3.47 | 1.04 | PROSPECTOR2 | | KYAVDMQVLRNGTKVVRSFRPDFVLEDFRHLVIGMQYAGLPSINSAQMVAIFKTLGGETYYPNHREMLT-LPTFPVVVKIGHAHSGMGVKVENHYDFQDIASALTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISGNWKTNSDRYKLWVDACSEGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVELITDLVISKMNQR |
10 | 4zgnA2 | 0.16 | 0.05 | 1.76 | 0.61 | SAM | | ------------------------------------------------------------------------------------------------------------------MHASTEFRCFVKSKRLIAFCQRDD-NYYEFLKDCYEKLISDLTFPDPDFVFDVYIHK-DRAWLIDINPF------------------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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