Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | TYSNLVDSLSQDEVKKAMESAGITSENIDLFFQSVNDFNTTIEKKSLVKDGFITVDNLKPEYDEVAIQEIWNAKNPKFIGYNCRITSFALMKDLISIGNPNTKNSNNLFMDEDALENSPKKLFNPVEQKYFESLFSFVPTENTKDISIHLNKVKEDWKSKDITFSNKKKASLISVFFHSHEDSYLFIGHAGVLIPTKDGKLLFIEKLSFNEPYQVIKFDNRIELNDYLMNKYDVSWNQPNAKPFIMENDQLL |
1 | 5lq6A | 0.13 | 0.09 | 3.04 | 0.72 | SPARKS-K | | ---------SSQDIISRINSKNIN----NNDSNEVKRIKDALSIELYPQ-----------NLSRDNLKQMARYVN------NCVLLSACLHYNILSSKLD--------------------------SAIVDKIIFGH-ELNQSNSIDEVEKEILNRYDIKR------ESSFIISAENYIAPIGESRHDFNAVVISEYDKYVQFIDSWKTSNI-----LPSLQEIKK----HF-----SSSGEFYVRAYD--- |
2 | 4l8tA2 | 0.10 | 0.06 | 2.21 | 0.71 | FFAS-3D | | TMTSV--LQQLSYFYTTMCQNGLDPELVRQAVKQLVTLNSLFLRKDMCS----CRKGMQIRCNISYLEE-WLKDKNLQNSAKETLEPLSQAAWLLQVKKTTDS-------DAKEIYE-RCTSLSAVQIIKILNSYTPIDDFEKRVTPSFVRKVQALLNSRE----DSSQLML-------------------------------------------------------------------------------- |
3 | 1vt4I | 0.11 | 0.10 | 3.57 | 0.41 | HHpred | | IMSKDAVSGTLRLFWTLLSK---QEEMVQKFVEEVLRINYKFLMIKTE-QRQPSM--MTRMYIE-QRD-RLYNDNQVFAYNVSRLQPYLKLRQALELRPALGSGKTWVALDVCNLKNC----NSPETLMLQKLLYQWTRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNALSCKILL-------TTRKQVT---DFLSAATTTHIHHSLTPDEVKSLLLKYLDCRPQ-DLPREVLTTN---- |
4 | 5lq6A | 0.15 | 0.10 | 3.49 | 0.61 | MUSTER | | ---------SSQDIISRINSKNIN----NNDSNEVKRIKDA-----------LSIELYPQNLSRDNLKQMARYVN------NCVLLSACLHYNI-------HHRQDILSSKLD-------------SAIVDKIIFGHEQSYSLNSIDEVEKEILNRYDIKR------ESSFIISAENYIPIIGESRHDFNAVVISEYDKYVQFIDKTSNILP-------SLQEIKKHF---------SSSGEFYVRAYD--- |
5 | 2btwB | 0.14 | 0.10 | 3.37 | 0.67 | CNFpred | | ------------EGEKLLLTS-------------------------------------RSREDFFPLSMQFVTQ----NQAYCGVASIIMVLNSLGINAPEVFTQDNFFSNEKTKAVIAPEVVAGMTLDELGRLIVKVNHASDTNIEDFRKQVAENLKQD--------GNFVIVNYLRKEERGGHISPLAAYNEQ---TDRFLIMDVSR-YPPVWVKTT---DLWKAMNTVD------QKTRGFVFVS---- |
6 | 1vt4I | 0.11 | 0.10 | 3.59 | 0.60 | HHsearch-2 | | IMSKDAVSGTLRLFWTLLSK---QEEMVQKFVEEVLRINYKFLMIKTE-QRQPSM--MTRMY-IEQRD-RLYNDNQVFAKNVSRLQPYLKLRQALELRPVLGSGKTWVALDVCNLKNC----NSPETEMLQKLLYQWTRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNALSCKILLT-----TRF-KQVT---DFLSAATTTHISHSLTPDEVKSLLLKYLDC-RPQDLPREVLTTNPRRL |
7 | 3umgA | 0.07 | 0.06 | 2.42 | 0.62 | Neff-PPAS | | -----WRTGIATAVADYAARHQLAVAFADRWRARYQPSMDAILSG-----------AREFVTLDILHRENLDFVLRESGIDPTNHDSGELDELARAWHV-----LTPWPDSVPGLTAIKAEYLLLDMAKNAGIPWDVIGSDINRKYKPDPQAYLRTAQVLGLHPGE-------VMLAAAHNGDAHATGLATAFILRPVEHGPHQTDDLAPTGSWDISATDITDLAAQLRAGS-------------------- |
8 | 2im9A | 0.15 | 0.13 | 4.41 | 0.58 | HHsearch | | -NSAAIEEQANSSIRKLYHTLNTT--SMAD---RISQISAYFKGTKYI-L--GSLGEGPARYDQFP--------RYRVDGFDCDTTVLSLALKHTRYKNKRSYINRNHFTDWNNLKDINEKNALINKPQWYNHKTIDIRLQKQNEQEKRLVELKATLETSNVQIPN-GA--VIEIIRPNWDLRELDISHLGFAIWI-NNELFFRQASSQY--GKVV----DVSLIDYLDKARSSP---TIKGINIQVVLPE- |
9 | 4fmvA | 0.09 | 0.08 | 3.08 | 0.70 | SP3 | | KTGNFSKWSPELANAKKASAKGARYDKYTEYAQYLNAYVKYMKDNGVDLYAISDYAQDWTWWTPQEMLNFMKNNAGSI-------------NCRVMAPESFQFLKNMILNDATALDNFYGTSVNNMAYPLYQQKSAGFDDDTTGNIMNMSKEIHDSMVTGNMNATSSGTIYFIYKRVDATATPNT--NVYVSAYTGDNKAVIVAINTGTAA--VSQKFNQNGSASSVVSYVTDSSRNMAAGANIAVTNGSFT |
10 | 3csqA | 0.10 | 0.09 | 3.27 | 0.82 | PROSPECTOR2 | | MVYVSNKKVNAQYILNYLSSNGWTKQAICGMLGNMQSWQNLDEGNTSLGFGL-------VQWTPASNYINWANSQG--LPYKNMDSELKRIIWEVNNNAQWINLRDM---TFKEYIKSTKTP--RELAMIFLASYERPANPNQPERGDQAEYWYKNLSLQLAQFGKTEKYPYYTCVWRGDASAYLAWTHFNVIDGKEYQGWTK-------KPDSCLAGTELHIYD--VFAVNNVEIINGNGYDWKTSDWQDG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|