>PF13965 (647 residues) SQPQYFLYKFPQDVDSVIIKVVSDAVYPCSVVSVQDIVCPVYDLDHNVEFNGVYQSMTKQ AAITVQKKDFPGEQFFVVFVIKPEDYACGGSVPSSLRGNGNRTWNLQRTKNLQVTIVPSI KKSVYVQAMFFSFLSFLSFYLGSVIVAFVHYIRVRRKASAGRYSPDDGSGIMTSSHPITA STPEGSSYGAIDESSSSGGRQLSSPERGPQAGSDTDSSVEEESDFDTMPEIESDKNVIRT KVFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICY YNFLCAHPLGVLSAFNNILSNVGHMLLGFLFLLIVLRRDILHRRAMEMKDIYTLDYGIPK HFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINAS AYSAYASFAVVICLAVLGVVFGKNDMWFWVIFSMIHVLASLALSTQIYYMGRFKIDLGIF RRAAMVLYTDCIQQCSRPMYMDRMVLLIVGNLVNWSFAIFGLVYRPRDFASYILGIFICN LLLYLAFYIIMKLRSSEKLLPIPLFCIVATAVMWAAALYFFFQNLSSWEETPAESREKNR PCILLGFFDDHDVWHFLSATALFFSFLVLLTLDDDLDTVRRDKIPVF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SQPQYFLYKFPQDVDSVIIKVVSDAVYPCSVVSVQDIVCPVYDLDHNVEFNGVYQSMTKQAAITVQKKDFPGEQFFVVFVIKPEDYACGGSVPSSLRGNGNRTWNLQRTKNLQVTIVPSIKKSVYVQAMFFSFLSFLSFYLGSVIVAFVHYIRVRRKASAGRYSPDDGSGIMTSSHPITASTPEGSSYGAIDESSSSGGRQLSSPERGPQAGSDTDSSVEEESDFDTMPEIESDKNVIRTKVFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNVGHMLLGFLFLLIVLRRDILHRRAMEMKDIYTLDYGIPKHFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYSAYASFAVVICLAVLGVVFGKNDMWFWVIFSMIHVLASLALSTQIYYMGRFKIDLGIFRRAAMVLYTDCIQQCSRPMYMDRMVLLIVGNLVNWSFAIFGLVYRPRDFASYILGIFICNLLLYLAFYIIMKLRSSEKLLPIPLFCIVATAVMWAAALYFFFQNLSSWEETPAESREKNRPCILLGFFDDHDVWHFLSATALFFSFLVLLTLDDDLDTVRRDKIPVF | |||||||||||||||||||
1 | 5u1sA | 0.08 | 0.08 | 3.00 | 1.20 | SPARKS-K | MHNNIIRDFTKIASNNIDLAIEDITTVDHSLNSIYSLLKSHHMWGHINSTVKQHLMIIVKLINNNALGLASSEIIFLFNETNLFQAHSLKNILLADFSTWNDYYLSNLKILALQIILKRKLVDEYLPHILELFSIVLSFFSVTCKVLFGLKFLQYIKQFKLPFKKFNITVECFSKNLLHKNYLEMGPNKILYDGLDKIMLLDILS----------------YEETTEVQRAIKSEYCNMSENRLLWSCISVDDLNVILENATATLKCLVCLWSTIRLDILRQFDCTVIYINSNIKSGVLSEICIDYKEPKRLSNIISVLFNASVLFKSHSFLLKTANLEISNVLISNDSKT------SHRTILKFEKFISSAKKIEIFSCLVYCMLRNDTLSFVFDFCQNAFIHCFTRLKITKFIEFSNSSEIMLSVLYGQLSRMIFCSLRGDLDKLHLLNKYELLIRIVYLLNLDMSKHLTTNL-SKITKLYINKWLQKSDEKAER--------ISSFEMDFVKMLLCYLNFNNFDKLSIELSLCIKSPYADNYLLEAYLSLYMIDDALMMKNQLQKTIEQALLHASVHLWDSDLTAIYFGKTLPAMKPELFDINNLPMSLYIKVILLNIKIFNESAKLNIKAGNVISAVIDCRKA | |||||||||||||
2 | 5x0mA | 0.13 | 0.10 | 3.48 | 1.26 | FFAS-3D | ------------------------------------------------------------------------------------------------------------------GWRTIVDALSLSITSLKDLVLLLLFSLFVFAVLGLQIYMGVLTQKCVKHFPADGSWGNFTDERWFNYTSNSSHWYIPDDWIEYPLCGNSSGAGMCPPGGYGGNPNYGYTSFDTFGWA-----------FLSVFRLVTLDYRSAGPWHILFFIIVVFYNFILAVVVMSYTHMVKRAVVLSPFFELFIAVFMALDHHDMNIEFERILRTGNYIFTSIYIVEAVLKFDFIIVVFAILELGLEGVQGLSVFRSFRLLRVFRLALNNFMSVMTKSYGAFVNVMYVMFLLLFIFAIIGMQLFGMNLPRWNFTDF-LHSFMIVFRALCDCMLVGDWSCIPFFVAVFFVGNLVILNLLIALLLNNYGSARDSSVQRMWSNIRRVCFLLAKNKYFQKFVTAVLV--ITSVLLALEDIYLPQRPVLVNITLYVDYVLTAFFVIEMIIMLFFTSKWYWLDFIVVVAYLLLRLLRVFRLFRPLSKVNGMQVVTSTL--------VEAVPHIFNVILVGIFFWLVFAIMGVQ-------------- | |||||||||||||
3 | 6d4hA | 0.12 | 0.11 | 3.85 | 1.07 | MUSTER | GR-NYTRQKIGEEAPQLMIQTPKEEGA------------NVLTTEA------LLQHLDSALQASVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIIT---PLDCFWEGAKLQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATA--PNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVK-NSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRTYVEVVHQSVAQNS--QKVLSFTTTTLDDILKSFSDVVIRVASGYLLMLAYACLTMLRWDCSKSQGA----------VGLAGVLLVALSVAAGLGLCSLI------ISFNAATTQVLPFLALGVGVDD-RIPFEDRTGECLKRTGASVALTSISNVIPIPALRAFSLQAAVVVVFNFAMVLLIFPALYRREDRRTLSSFAEKHYAPFLLKPKAK----VVVIFLFLGLLGVSLYGTTRVLDLTDIREYDFIAAQFKYFSFYNMYIVQHLLYDRSFSNVKYVMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLQRLV-AFYIYLTAWVSNDPVAYAASQANRPHRPEWVHD | |||||||||||||
4 | 4he8F | 0.07 | 0.04 | 1.57 | 1.68 | CNFpred | ---------------------------------------------------------------------------------------------------------------IPFSLLL-----DNLSGFMLLIVTGVGFLIHVYAIGYMGGD----------------------------------------------------------------------------------------------------------PGYSRFFAYFNLFIAMMLTLVLADSYPVMFI--------GWEGVGLASFLLIGFW-PQYADSARKAFIVNRIGDLGFMLGMAILWALYGTLSISELKEAMPLKNPDLLALAGLLLFLGAVGKSAQI-----PLMVWLPDAMAGPTPVSALIHA--------ATMVTAGVYLIARSSFLYSVL-----PDVSYAIAVVGLLTAAYGALSAFGQT----------------------------DIKKIVAYSTISQLGYMFLAAGVG----AYWVALFHVFTHAFFKALLFLASGSVIHAL-LPQTRWHALIGALALGGLLSGFWSKDA-----ILAATLTYPFGGVGF-----YVGALLVAVLTAMYAMRWFVLVF-------------- | |||||||||||||
5 | 5mz611 | 0.09 | 0.06 | 2.49 | 1.40 | Neff-PPAS | ----------------------------------------------------------------------------------------------------------------------HIEKLDELRKNVSCTVIGFAEQTAELQQEISELFIAEFGVNGPIDMNSLSKLARITSYYASSEYFQ----------------------------------------------GLAKYQRTACKMFITWQTLRKEAMECRSKDREIFASIPAKLCFFYFYNLCRAVVCLLDYIDLSDDTLAKEAALRWLMFLGETELIEKKLKTWKMDKSSKDMFSATEFAMNYLKKSEYRVEMLEKLMKLTRSFSRYELASYVSWLCSTLSNVPVGSALRECEFPDRVSHIQEAALKSDSLVRNRIPGLDSNYYVHIGSTIAWHFEMRRECALVNVNLRVALKSASFFRVLQTTNTLAYYSSIIEEAGSEKNAKLMRVSCVNLLSSNPIVCNVCTIYPLHSSFAAEYMMSYAIHSDFSQLSIKHFNDEFARIRERGMSSQVLMHRDSSVRPRPNIIQNEIFGMCVIRWLTKKLDSKESADEDTMEIFNNALKIVRYLQQ---RTTDMILAVTQLGRQLEFPMECNEKVRLAMRNEMNHY | |||||||||||||
6 | 6d4hA1 | 0.09 | 0.09 | 3.19 | 1.47 | PROSPECTOR2 | PLCGKFAANLETNVEELWVEVGGAMFNPQLMIQTPKEEGAHLDSALQASRVHVYMYNRQWKLEHLCYKSGEL---------ITETGYMDQIIEYLYPCLIITPLDCFWEG------AKLQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAW-QRTYVEVVHQSVAQNSTQKVLSFTTT---------TLDDILKSFIRVASGYLLMLAYACLTMLRWD----------CSKSQGAVGLAGVLLVALSVAAGLGLCSL-----IGISFNAATTQVLPFLALAHAFSETRIPFEDRTGECLKRTGASVALTSIFMAALIPIPALRAFSLQAAVVVVFILSMDLYRREDRRTLSSFAEKHYAPF----------LLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLYDFIAAQLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGFLTAIGDKNRRAVLA------LAGSEFDFIVRYFFAVLAILTILGVLNGLVL-----------LPVL | |||||||||||||
7 | 6d4hA1 | 0.07 | 0.06 | 2.65 | 1.20 | SPARKS-K | AKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPVHVYMYNRQWKLEHITETGYMDQI------------------------IEYLYPCLIITPLDCFWEYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLRPCLNPADPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQGTVKNSAHALQTMFQLMTPKQMYEHFKGYEYVSHINWN-EDKAAAILEAWQRTYVEVVHQSVAQNST----QKVLSFTTTTLDDILKSFSVSVIRVASGYLLMLAYACLTML--------RWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFRIPFEDRTGECLKRTGASVALTSISNVTALIPIPAFSLQAAVVVVFNFAMVLILSMDLYDGLDLTDEYDFIAAQFKYQYIGLRLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTNRRA-VLALEHMFAPVLDGALGVLMLAGSEFD--------------------FIVRYFFAVLAILTILGVLNGLVLLPVLLS---------- | |||||||||||||
8 | 3ayfA2 | 0.11 | 0.08 | 2.72 | 1.26 | FFAS-3D | -------------------------------------------------------------------------------------------------------------KSITILISSTVLVGGYWIFSAVWWSGASVTILILFIGIILYVFYRYQLSMQEAYAEGKFPVIDLRRQPLT------------------------------------------------------------------------------PSQVKAGKYFVVVSALFFVQTMFGALLAHYYTEPDS---------FFGINWIYDILPFNIAKGYIATAWLGMGIFIAPLVGALVVLVGGSMIGQWLGVNGYLGNEWIILVVGMLLWLFIVFRGVKRGLRESDKGGLIHLLFYSAIAVPFFYIFAFFIQPDTNFTMADIFEVFAVVVIGFLLVQLRLVTKKSTVRALYFQFTILLGSGVHYYYNGSPEVWIALGAVFSAEQYKMMRDGGANFPYKATFWFLISTAIWNLVLPAVSYFEHGQFLTHAAMMGVYGMFAIAVLLYSLRNIAWNDKWLKFSCWMLNIGLAGMVVITLLPV-----GILQMKEAFIHGYWASRSPSFLQQDVVQNLDTIFLIGVVALLVFAIKALFHLRK------ | |||||||||||||
9 | 6d4hA1 | 0.11 | 0.10 | 3.55 | 1.03 | MUSTER | GR-RELNYKIGEEAMQLMIQTPKEEGA------------NVLTTEALLQHLDSALQASR-----VHVYMYNRQW--------KLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLRWTNFDPLEFELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRTYVEVVHQSVAQNS--QKVLSFTTTTLDDILKSFSVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAV----------GLAGVLLVALSVAAGLGLCSLI----ISFNAATTQVLPFLALGVGVDDVF-RIPFEDRTGECLKRTGASVALTSISNVALIPIPALAVVVVFNFAMVLLIFPAILSMDLYRREDRRTLSSFAEKHYAPFLLKPKAK----VVVIFLFLGLLGVSLYGTTRVLDLTDRHWLLLFISVVLACTFLVCAVFLL-------PWTAGIIVMVLALMTVELFGMMG-----IGIK----------------LSAVPVVILIASVGIGVEFTVHVALALTAIGDKNRRAPVL | |||||||||||||
10 | 5lnkL | 0.09 | 0.05 | 1.78 | 1.64 | CNFpred | ------------------------------------------------------------------------------------------------------------------------------DFFSMMFVPVALFVTWSIMEFSMWYMHSD-------------------------------------------------------------------------------------------------------PNINQFFKYLLLFLITMLILVTANNLFQLFI--------GWEGVGIMSFLLIGWWRTDANTAALQAILYNRIGDIGFILAMAWFLINLNTWDLQQIFMLNP-NDSNLPLMGLILAATGKSAQF--------GLHPWLPSAMEGPTPVSALLHS--------STMVVAGIFLLIRFYPLTEN-----NKFGQSIMLCLGAMTTLFTAMCALTQN----------------------------DIKKIIAFSTSSQLGLMMVTIGIN-QPHLAFLHICTHAFFKAMLFMCSGSIIHSLNDEDIRKMGGLFMPFTTTALIIGSLALTG-------MPFLTGFYSKDLIIESANTSYTWALLMTLVATSFTAIYSTRIIFFA----------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |