Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | LASFAGKNRVLVITAPHDSDGYYRLMMSLLKPDVYCELAERHVHQIVMFHQEGEMGGKVRRITTEGKVMEEPLDTALIPRLMSFLKMEKGKFGMVLLKKTLQVEERYPYPVRLEAMYEVIDQSPMRKVE |
1 | 3drnA | 0.12 | 0.12 | 4.10 | 1.72 | SPARKS-K | | LSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNW-DLLKDYDVVVIGVSSDD---INSHKRFKEKYK-LPFILVSDPDKKIRELYGAKGPARITFVIDKKGIIRHIYNSQMNVNEALKALKQIKEEEIS |
2 | 5epfA | 0.08 | 0.08 | 3.02 | 1.37 | FFAS-3D | | LSVLLSDGPVVLFFYPAAMTPGCTKEACHFRD-LAKEFAEVRASRVGISTDPVRKQAKFAEVRRFDYPLLSDAQ----GTVAAQFGVKRGKRTTFVIDTDRKVLDVISSEFSMDKALATLRAIR----- |
3 | 2rliA | 0.11 | 0.11 | 3.90 | 1.37 | HHpred | | KADFRGQ-WVLMYFGFT-HCPDCPDELEKLV-QVVRQLEAEPVQPVFITVDPERDVEAMARYVDFHPRLLGLTGSKQVAQASHSYRVYYHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFR- |
4 | 4nmuA | 0.14 | 0.12 | 4.25 | 1.20 | MUSTER | | LKDLKGK-GVFLNFWGT-WCKPCEKEP---YNELYPKYKEKGVEIIALDADETD--IAVKNFVNQ-YGLKFPVAIDKGQKIIGTYGV-GPLPTSFLIDKDGKVVEQIIGEQTKEQLEGYLKKI-TP--- |
5 | 5xbqA | 0.09 | 0.09 | 3.29 | 1.52 | CNFpred | | DYFTKQGKWFILFSHPADFTPVMTTEFYGMQ-KRVEEFRKLGVEPIGLSVDQVEDHSAWIEWIKDSVEIDFPVIADDRGELAEKLGMIPTARAVFVVDDKGIIRAIVYYGRDWDEILRLVKALKISTEK |
6 | 2v2gA | 0.13 | 0.13 | 4.55 | 0.58 | HHsearch-2 | | FHDWLGNSWGVLFSHPRDFTPVSTTELGRVI-QLEGDFKKRGVKLIALSCDNVADHKEWSEDVLSGGDMPYPIIADETRELAVKLGMVLTCRAVFIIGPDKKLKLSILYPANFSEILRVIDSLQLTAQK |
7 | 3drnA | 0.11 | 0.11 | 3.89 | 1.31 | Neff-PPAS | | LSDYIGKHNIVLYFYPKDDTPGSTREASAF-RDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDK----KIRELYGAKGPARITFVIDKKGIIRHIYNSQMNVNEALKALKQIKEEEIS |
8 | 2v2gA | 0.13 | 0.13 | 4.54 | 0.94 | HHsearch | | FHDWLGNSWGVLFSHPRDFTPVSTTELGRVI-QLEGDFKKRGVKLIALSCDNVADHKEWSEDVLSGGDMPYPIIADETRELAVKLGMVLTCRAVFIIGPDKKLKLSILYPANFSEILRVIDSLQLTAQ- |
9 | 3drnA | 0.11 | 0.11 | 3.89 | 1.27 | PROSPECTOR2 | | LSDYIGKHNIVLYFYPKDDTPGSTREASAFR-DNWDLLKDYDVVVIGVSSDDINSHKRFKEK----YKLPFILVSDPDKKIRELYGAKGFARITFVIDKKGIIRHIYNSQMNVNEALKALKQIKEEEIS |
10 | 3sbcA | 0.09 | 0.08 | 2.99 | 1.22 | SAM | | LDKYKGK-YVVLAFIPLAFTFVSPTEIIAFS-EAAKKFEEQGAQVLFASTDSEYSLLAWTN----IPPINIPLLADTNHSLSRDYGVLIALRGLFIIDPKGVIRHITINDLNVDEALRLVEA------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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