Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | PFYNPALVAIYRRNDDVGMIVPSFGISYNDEDHMVDDLDSISSFIEKKDYTNTEQLQKSLDNLQNDKLKAEIGGVVAFAIPNQFIAANLFAKAYTETFVTPDVYSGENTASLTPELQSVENAELSAVNAVSVGVTEVGLSLAKYQTFLGQHIAFGVTPKLQRIYTYVYSASVTDYDIKDARDNGQGETMFNLDAGALWFYGPLRVGFSATNLVKRDIQTQSYTKSLKSQFGKTRDINIGYAYQMRPLYTVGVGIVADYATLSVDYD |
1 | 3dwoX | 0.14 | 0.12 | 4.25 | 0.99 | SPARKS-K | | AFNNPAAMAFIDKRIQLTVNYADIDIKYNGDAYDYQGMTGGYQDGPTPELGTN--------DGGQAGFGAWLPTGFLVVPINDRFAFGLSQVVPMGMRSTW------------------DPNWKGRDFAVDTKIETIGLTGSLSFKVNDN-FSLGAGVIIQRTSGFVSQNLDLYASAANSPGMGGIPFSPGFFAGAVWKPDRDTLGFAYHAKIRNKLKGHAIEGGTPGLAYPGLDLRMGASASARAYASLDWVHQNDRLSLGASAT |
2 | 3dwoX | 0.14 | 0.12 | 4.24 | 1.06 | FFAS-3D | | -FNNPAAMAFIDKRITVNYADIDIKYNGDAYDYQGNPMTGGYQDGPGTPELGTND-------GGQAGFGAWLPTGFLVVPINDRFAFGLSQVVPMGMRST----------------WDPNWKGRDFAVDTKIETIGLTGSLSFKV---NDNFSLGAGVIIQRTSGFVSQNLDLYASAANSPGMGGDNTSPGFFAGAVWKPDRDTLGFAYHAKIRNKLKGHAIEGGTPGLAYPGLDLRMGASASARPYASLDWVHQNDRLSLGASA- |
3 | 3dwoX | 0.13 | 0.12 | 4.04 | 0.72 | HHpred | | AFNNPAAMAFIDKRIQLTVNYADIDIKYNGDAYDYQ--------GNPMTGGYQDGPGTPLTNDGGQAGFGAWLPTGFLVVPNDRFAFGLSQVVPM--GMRSTWDPNWKGR---------DFAVDTK-----IETIGLTGSLSFKV---NDNFSLGAGVIIQRTSGFVSQ-NLDLFPASSAMRVKVDNTSPGFFAGAVWKPDRDTLGFAYHAKIRNKLKGHYNYDHDGGLPPLRMGASASARLDIPAYASLDWVHQNDRLSLGASAT |
4 | 3bryA | 0.13 | 0.11 | 3.80 | 1.08 | MUSTER | | MMENPATLGLMGEGRHFSLGLDVVSTDIKVTTASSGN--------------------------HGNNNGPYFAPQTAFVYRQGRYAFGAGIFAE--GGLGTQYGGSS------FLSRTSNGVDTGLDQFSRLLVLRVPFSAAYHV---TDKLTVGASVDAVWTSLNLGTLLDVSQIGTLAGQGRVSGTLIGGRLGLTYQVTDTRIGAAYQAKTHVGDLTGQATLSAVGNIPLKGDVTV-RNFQMPAQLTVGISHQFNQLSVSADYQ |
5 | 2r4lA | 0.11 | 0.09 | 3.37 | 1.48 | CNFpred | | VSRNAALITMFD-RPTFSAGAVYIDPDVNISGTSPS-----------GRSLKADNIA--------PTAWVPNM-HFVAPIN-DQFGWGASITSNYGLATEFND-----TYAGGS-----------VGGTTDLETMNLNLSGAYRLN---NAWSFGLGFNAVYARAKIERFAGDLG-TKTAHLNG-NQWGFGWNAGILYELDNNRYALTYRSEVKIDFKGNYSS-LPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDQWAIHYSLA |
6 | 3bryA | 0.14 | 0.12 | 3.99 | 2.34 | HHsearch-2 | | MMENPATLGLMGEGRHFSLGLDVVSTDIKVTTASS-------G--NHG--------------NNNGPYF---APQTAFVYRQGRYAFGAGIFAEGGL--GTQYGGSSF--LSRTS-NGVDTG---LDQFSRLLVLRVPFSAAYHVT---DKLTVGASVDAVWTSLNLGTLLDVSQIGGYIDFSGVQAWGIGGRLGLTYQVPDTRIGAAYQAKTHVDLTGQATLSA----VGNIPLKDVVRNFQMPAQLTVGISHQFDQLSVSADYQ |
7 | 3bryA | 0.12 | 0.10 | 3.59 | 1.36 | Neff-PPAS | | --ENPATLGLMGEGRHFSLGLDVVSTDIKVTTASSGN--------------------------HGNNNGPYFAPQTAFVYRQGRYAFGAGIFAEGGLGTQYG--------GSSFLSRTSNGVDTGLDQFSRLLVLRVPFSAAYHV---TDKLTVGASVDAVWTSLNLGTLLDVSQIGTLAGQGGVQAWGIGGRLGLTYQVTDTRIGAAYQAKTHGDLTGQATLSA--VGNIPLKGDVTVRNFQMPAQLTVGISHQFNQLSVSADYQ |
8 | 3bryA | 0.13 | 0.11 | 3.89 | 2.70 | HHsearch | | MMENPATLGLMGEGRHFSLGLDVVSTDIKVTTASS-------G--NHG--------------NNNGPYF---APQTAFVYRQGRYAFGAGIFAEGG--LGTQYGGSSF--LSRTSN---G-VDTGLDQFSRLLVLRVPFSAAYHVT---DKLTVGASVDAVWTSLNLGTLLDVSQIGGYIDFSGVQAWGIGGRLGLTYQVPDTRIGAAYQAKTHVDLTGQATLSAV-GNIPLKGDV-TVRNFQMPAQLTVGISHQFDQLSVSADY- |
9 | 3bryA | 0.12 | 0.11 | 3.69 | 1.07 | PROSPECTOR2 | | VFENPATLGLMGEGRHFSLGLDVVSTDIKVTTASSGN--------------------------HGNNNGPYFAPQTAFVYRQGRYAFGAGIFAEGGLGTQYGGSSFLSRTSNGVDTGLDQ--------FSRLLVLRVPFSAAYHV---TDKLTVGASVDAVWTSLNLGTLLDVSQIGTLAGQGRVSGWGIGGRLGLTYQVPDTRIGAAYQAK----THVGDLTGQATLSAVGNIPLKGDVTVRMPAQLTVGISHQNDQLSVSADYH |
10 | 3bryA | 0.15 | 0.12 | 4.06 | 0.69 | SAM | | -MENPATLGLMGEHFSLGLDVVSTDIKVTTASS-----------------------------NHGNNNGPYFAPQTAFVYRQGRYAFGAGIFAEGGLGT--QYGGSSF----------SNGVDTGLDQFSRLLVLRVPFSAAYHVT---DKLTVGASVDAVWTSLNLGTLLDVSQSGGYIDFSGVQAWGIGGRLGLTYQVPDTRIGAAYQAKTHVDLTGQATLSAV------LKGDVTVRNFQMPAQLTVGISHQNDQLSVSADYQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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